Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1345

Experiment: MoYLS4 with Bacitracin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1344 and DvMF_1345 are separated by 396 nucleotidesDvMF_1345 and DvMF_1346 are separated by 172 nucleotides DvMF_1344: DvMF_1344 - extracellular solute-binding protein family 3 (RefSeq), at 1,639,431 to 1,640,249 _1344 DvMF_1345: DvMF_1345 - hypothetical protein (RefSeq), at 1,640,646 to 1,640,834 _1345 DvMF_1346: DvMF_1346 - Glu/Leu/Phe/Val dehydrogenase (RefSeq), at 1,641,007 to 1,644,060 _1346 Position (kb) 1640 1641Strain fitness (log2 ratio) -1 0 1at 1639.879 kb on + strand, within DvMF_1344at 1640.644 kb on + strandat 1640.827 kb on - strandat 1640.872 kb on - strandat 1640.961 kb on - strandat 1640.963 kb on + strandat 1641.105 kb on - strandat 1641.197 kb on - strandat 1641.415 kb on + strand, within DvMF_1346at 1641.600 kb on - strand, within DvMF_1346at 1641.619 kb on - strand, within DvMF_1346at 1641.832 kb on + strand, within DvMF_1346

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1 mg/ml
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1,639,879 + DvMF_1344 0.55 -0.4
1,640,644 + +0.6
1,640,827 - -0.4
1,640,872 - -0.3
1,640,961 - -0.1
1,640,963 + -0.2
1,641,105 - -0.4
1,641,197 - -0.5
1,641,415 + DvMF_1346 0.13 -0.2
1,641,600 - DvMF_1346 0.19 -0.5
1,641,619 - DvMF_1346 0.20 -0.6
1,641,832 + DvMF_1346 0.27 -0.4

Or see this region's nucleotide sequence