Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1124

Experiment: MoYLS4 with Bacitracin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1122 and DvMF_1123 are separated by 108 nucleotidesDvMF_1123 and DvMF_1124 are separated by 150 nucleotidesDvMF_1124 and DvMF_1125 overlap by 1 nucleotides DvMF_1122: DvMF_1122 - Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq), at 1,378,795 to 1,380,240 _1122 DvMF_1123: DvMF_1123 - queuosine biosynthesis protein QueD (RefSeq), at 1,380,349 to 1,380,717 _1123 DvMF_1124: DvMF_1124 - radical SAM domain protein (RefSeq), at 1,380,868 to 1,381,542 _1124 DvMF_1125: DvMF_1125 - exsB protein (RefSeq), at 1,381,542 to 1,382,261 _1125 Position (kb) 1380 1381 1382Strain fitness (log2 ratio) -2 -1 0 1at 1379.883 kb on - strand, within DvMF_1122at 1380.085 kb on - strand, within DvMF_1122at 1380.279 kb on - strandat 1380.285 kb on - strandat 1380.825 kb on - strandat 1380.856 kb on + strandat 1380.921 kb on - strandat 1381.171 kb on + strand, within DvMF_1124at 1381.171 kb on + strand, within DvMF_1124at 1381.280 kb on + strand, within DvMF_1124at 1381.637 kb on + strand, within DvMF_1125at 1381.702 kb on - strand, within DvMF_1125at 1382.199 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1 mg/ml
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1,379,883 - DvMF_1122 0.75 +0.6
1,380,085 - DvMF_1122 0.89 +0.2
1,380,279 - -0.5
1,380,285 - -0.6
1,380,825 - -0.4
1,380,856 + -0.2
1,380,921 - -1.0
1,381,171 + DvMF_1124 0.45 -1.0
1,381,171 + DvMF_1124 0.45 -0.7
1,381,280 + DvMF_1124 0.61 -0.9
1,381,637 + DvMF_1125 0.13 -1.0
1,381,702 - DvMF_1125 0.22 -0.7
1,382,199 - -2.0

Or see this region's nucleotide sequence