Experiment: MoYLS4 with Bacitracin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0989 and DvMF_0990 are separated by 292 nucleotides DvMF_0990 and DvMF_0991 overlap by 17 nucleotides
DvMF_0989: DvMF_0989 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 1,202,069 to 1,202,950
_0989
DvMF_0990: DvMF_0990 - iron-containing alcohol dehydrogenase (RefSeq), at 1,203,243 to 1,204,403
_0990
DvMF_0991: DvMF_0991 - signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq), at 1,204,387 to 1,206,210
_0991
Position (kb)
1203
1204
1205 Strain fitness (log2 ratio)
-1
0
1 at 1202.260 kb on + strand, within DvMF_0989 at 1202.356 kb on + strand, within DvMF_0989 at 1202.361 kb on + strand, within DvMF_0989 at 1202.548 kb on - strand, within DvMF_0989 at 1202.551 kb on - strand, within DvMF_0989 at 1202.707 kb on + strand, within DvMF_0989 at 1202.707 kb on + strand, within DvMF_0989 at 1203.077 kb on - strand at 1203.085 kb on - strand at 1203.152 kb on + strand at 1203.258 kb on - strand at 1203.512 kb on + strand, within DvMF_0990 at 1203.554 kb on - strand, within DvMF_0990 at 1203.554 kb on - strand, within DvMF_0990 at 1203.554 kb on - strand, within DvMF_0990 at 1203.556 kb on + strand, within DvMF_0990 at 1203.556 kb on + strand, within DvMF_0990 at 1203.596 kb on + strand, within DvMF_0990 at 1203.626 kb on + strand, within DvMF_0990 at 1203.634 kb on - strand, within DvMF_0990 at 1203.851 kb on + strand, within DvMF_0990 at 1203.852 kb on + strand, within DvMF_0990 at 1204.040 kb on - strand, within DvMF_0990 at 1204.049 kb on - strand, within DvMF_0990 at 1204.085 kb on + strand, within DvMF_0990 at 1204.277 kb on + strand, within DvMF_0990 at 1204.372 kb on + strand at 1204.620 kb on - strand, within DvMF_0991 at 1204.699 kb on - strand, within DvMF_0991 at 1204.804 kb on - strand, within DvMF_0991 at 1204.898 kb on + strand, within DvMF_0991 at 1205.016 kb on + strand, within DvMF_0991 at 1205.053 kb on - strand, within DvMF_0991 at 1205.118 kb on - strand, within DvMF_0991 at 1205.193 kb on - strand, within DvMF_0991 at 1205.356 kb on - strand, within DvMF_0991 at 1205.378 kb on + strand, within DvMF_0991
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1 mg/ml remove 1,202,260 + DvMF_0989 0.22 +0.2 1,202,356 + DvMF_0989 0.33 -0.9 1,202,361 + DvMF_0989 0.33 -0.0 1,202,548 - DvMF_0989 0.54 -0.4 1,202,551 - DvMF_0989 0.55 -1.5 1,202,707 + DvMF_0989 0.72 -0.5 1,202,707 + DvMF_0989 0.72 -0.1 1,203,077 - -0.3 1,203,085 - -0.1 1,203,152 + -0.5 1,203,258 - +0.4 1,203,512 + DvMF_0990 0.23 +0.6 1,203,554 - DvMF_0990 0.27 +0.3 1,203,554 - DvMF_0990 0.27 +0.1 1,203,554 - DvMF_0990 0.27 +0.5 1,203,556 + DvMF_0990 0.27 +0.1 1,203,556 + DvMF_0990 0.27 -0.0 1,203,596 + DvMF_0990 0.30 +0.0 1,203,626 + DvMF_0990 0.33 -0.1 1,203,634 - DvMF_0990 0.34 +0.3 1,203,851 + DvMF_0990 0.52 +0.6 1,203,852 + DvMF_0990 0.52 -0.1 1,204,040 - DvMF_0990 0.69 -0.1 1,204,049 - DvMF_0990 0.69 +0.6 1,204,085 + DvMF_0990 0.73 -0.2 1,204,277 + DvMF_0990 0.89 +1.7 1,204,372 + +0.1 1,204,620 - DvMF_0991 0.13 -1.1 1,204,699 - DvMF_0991 0.17 +0.1 1,204,804 - DvMF_0991 0.23 +0.2 1,204,898 + DvMF_0991 0.28 -0.3 1,205,016 + DvMF_0991 0.34 +0.4 1,205,053 - DvMF_0991 0.37 +0.3 1,205,118 - DvMF_0991 0.40 +0.4 1,205,193 - DvMF_0991 0.44 -0.2 1,205,356 - DvMF_0991 0.53 +0.5 1,205,378 + DvMF_0991 0.54 +0.1
Or see this region's nucleotide sequence