Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0879

Experiment: MoYLS4 with Bacitracin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0878 and DvMF_0879 overlap by 11 nucleotidesDvMF_0879 and DvMF_0880 are separated by 174 nucleotidesDvMF_0880 and DvMF_0881 are separated by 107 nucleotides DvMF_0878: DvMF_0878 - protein of unknown function UPF0052 and CofD (RefSeq), at 1,061,141 to 1,062,562 _0878 DvMF_0879: DvMF_0879 - hypothetical protein (RefSeq), at 1,062,552 to 1,062,815 _0879 DvMF_0880: DvMF_0880 - phosphate uptake regulator, PhoU (RefSeq), at 1,062,990 to 1,063,670 _0880 DvMF_0881: DvMF_0881 - phosphate ABC transporter, ATPase subunit (RefSeq), at 1,063,778 to 1,064,545 _0881 Position (kb) 1062 1063Strain fitness (log2 ratio) -1 0 1at 1061.693 kb on - strand, within DvMF_0878at 1062.031 kb on + strand, within DvMF_0878at 1062.039 kb on - strand, within DvMF_0878at 1062.978 kb on - strandat 1063.161 kb on + strand, within DvMF_0880at 1063.229 kb on + strand, within DvMF_0880at 1063.450 kb on + strand, within DvMF_0880at 1063.458 kb on - strand, within DvMF_0880at 1063.513 kb on - strand, within DvMF_0880

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1 mg/ml
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1,061,693 - DvMF_0878 0.39 -0.9
1,062,031 + DvMF_0878 0.63 -0.7
1,062,039 - DvMF_0878 0.63 -0.7
1,062,978 - -0.1
1,063,161 + DvMF_0880 0.25 -0.8
1,063,229 + DvMF_0880 0.35 +0.2
1,063,450 + DvMF_0880 0.68 -0.6
1,063,458 - DvMF_0880 0.69 -0.4
1,063,513 - DvMF_0880 0.77 +0.1

Or see this region's nucleotide sequence