Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0823

Experiment: MoYLS4 with Bacitracin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0822 and DvMF_0823 are separated by 268 nucleotidesDvMF_0823 and DvMF_0824 are separated by 7 nucleotides DvMF_0822: DvMF_0822 - GTP-binding protein TypA (RefSeq), at 991,207 to 993,045 _0822 DvMF_0823: DvMF_0823 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 993,314 to 994,684 _0823 DvMF_0824: DvMF_0824 - signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq), at 994,692 to 996,542 _0824 Position (kb) 993 994 995Strain fitness (log2 ratio) -1 0 1at 992.626 kb on + strand, within DvMF_0822at 992.734 kb on - strand, within DvMF_0822at 992.779 kb on + strand, within DvMF_0822at 992.787 kb on - strand, within DvMF_0822at 992.987 kb on - strandat 993.068 kb on - strandat 993.081 kb on + strandat 993.304 kb on + strandat 993.900 kb on - strand, within DvMF_0823at 993.983 kb on - strand, within DvMF_0823at 993.983 kb on - strand, within DvMF_0823at 994.069 kb on - strand, within DvMF_0823at 994.376 kb on + strand, within DvMF_0823at 994.392 kb on - strand, within DvMF_0823at 994.511 kb on - strand, within DvMF_0823at 994.545 kb on - strand, within DvMF_0823at 994.687 kb on - strandat 995.084 kb on + strand, within DvMF_0824at 995.305 kb on + strand, within DvMF_0824at 995.313 kb on - strand, within DvMF_0824at 995.560 kb on - strand, within DvMF_0824

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1 mg/ml
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992,626 + DvMF_0822 0.77 +0.3
992,734 - DvMF_0822 0.83 +0.6
992,779 + DvMF_0822 0.85 +0.7
992,787 - DvMF_0822 0.86 +0.4
992,987 - +0.4
993,068 - +0.2
993,081 + -0.6
993,304 + -1.7
993,900 - DvMF_0823 0.43 -0.2
993,983 - DvMF_0823 0.49 -0.3
993,983 - DvMF_0823 0.49 -0.5
994,069 - DvMF_0823 0.55 -0.7
994,376 + DvMF_0823 0.77 -1.4
994,392 - DvMF_0823 0.79 -0.8
994,511 - DvMF_0823 0.87 -0.2
994,545 - DvMF_0823 0.90 -0.3
994,687 - -0.6
995,084 + DvMF_0824 0.21 -0.3
995,305 + DvMF_0824 0.33 -0.2
995,313 - DvMF_0824 0.34 -0.8
995,560 - DvMF_0824 0.47 +0.1

Or see this region's nucleotide sequence