Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0782

Experiment: MoYLS4 with Bacitracin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0781 and DvMF_0782 are separated by 346 nucleotidesDvMF_0782 and DvMF_0783 are separated by 548 nucleotides DvMF_0781: DvMF_0781 - NLP/P60 protein (RefSeq), at 938,303 to 939,085 _0781 DvMF_0782: DvMF_0782 - hypothetical protein (RefSeq), at 939,432 to 939,974 _0782 DvMF_0783: DvMF_0783 - Glucose/sorbosone dehydrogenase-like protein (RefSeq), at 940,523 to 941,923 _0783 Position (kb) 939 940Strain fitness (log2 ratio) -1 0 1at 938.497 kb on + strand, within DvMF_0781at 938.813 kb on - strand, within DvMF_0781at 938.973 kb on + strand, within DvMF_0781at 939.162 kb on - strandat 939.278 kb on - strandat 939.283 kb on - strandat 939.297 kb on + strandat 940.084 kb on + strandat 940.113 kb on + strandat 940.223 kb on + strandat 940.248 kb on + strandat 940.363 kb on + strandat 940.805 kb on - strand, within DvMF_0783at 940.810 kb on - strand, within DvMF_0783at 940.904 kb on + strand, within DvMF_0783at 940.955 kb on + strand, within DvMF_0783

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1 mg/ml
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938,497 + DvMF_0781 0.25 -0.3
938,813 - DvMF_0781 0.65 +0.2
938,973 + DvMF_0781 0.86 +0.8
939,162 - -0.6
939,278 - -0.3
939,283 - -0.5
939,297 + -0.3
940,084 + -0.2
940,113 + -0.3
940,223 + -0.2
940,248 + -0.8
940,363 + +1.4
940,805 - DvMF_0783 0.20 -0.7
940,810 - DvMF_0783 0.20 -0.5
940,904 + DvMF_0783 0.27 -0.7
940,955 + DvMF_0783 0.31 +0.0

Or see this region's nucleotide sequence