Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0258

Experiment: MoYLS4 with Bacitracin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0257 and DvMF_R0014 are separated by 280 nucleotidesDvMF_R0014 and DvMF_0258 are separated by 66 nucleotidesDvMF_0258 and DvMF_0259 are separated by 18 nucleotides DvMF_0257: DvMF_0257 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (RefSeq), at 293,621 to 294,940 _0257 DvMF_R0014: DvMF_R0014 - RNA component of RNaseP (RefSeq), at 295,221 to 295,528 _R0014 DvMF_0258: DvMF_0258 - protein of unknown function DUF164 (RefSeq), at 295,595 to 296,344 _0258 DvMF_0259: DvMF_0259 - protein of unknown function DUF34 (RefSeq), at 296,363 to 297,397 _0259 Position (kb) 295 296 297Strain fitness (log2 ratio) -2 -1 0 1at 296.576 kb on - strand, within DvMF_0259at 296.706 kb on - strand, within DvMF_0259at 296.713 kb on + strand, within DvMF_0259at 297.092 kb on - strand, within DvMF_0259at 297.118 kb on + strand, within DvMF_0259

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1 mg/ml
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296,576 - DvMF_0259 0.21 -2.0
296,706 - DvMF_0259 0.33 -1.2
296,713 + DvMF_0259 0.34 -2.7
297,092 - DvMF_0259 0.70 -0.9
297,118 + DvMF_0259 0.73 -1.3

Or see this region's nucleotide sequence