Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0005

Experiment: MoYLS4 with Bacitracin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0004 and DvMF_0005 are separated by 92 nucleotidesDvMF_0005 and DvMF_0006 are separated by 402 nucleotides DvMF_0004: DvMF_0004 - protein of unknown function DUF181 (RefSeq), at 4,555 to 6,309 _0004 DvMF_0005: DvMF_0005 - methyltransferase small (RefSeq), at 6,402 to 7,196 _0005 DvMF_0006: DvMF_0006 - hypothetical protein (RefSeq), at 7,599 to 8,240 _0006 Position (kb) 6 7 8Strain fitness (log2 ratio) -1 0 1at 5.557 kb on + strand, within DvMF_0004at 5.601 kb on - strand, within DvMF_0004at 5.694 kb on - strand, within DvMF_0004at 5.868 kb on + strand, within DvMF_0004at 5.868 kb on + strand, within DvMF_0004at 6.163 kb on + strandat 6.588 kb on - strand, within DvMF_0005at 6.739 kb on - strand, within DvMF_0005at 6.739 kb on - strand, within DvMF_0005at 6.763 kb on + strand, within DvMF_0005at 6.831 kb on - strand, within DvMF_0005at 6.937 kb on + strand, within DvMF_0005at 6.994 kb on + strand, within DvMF_0005at 7.210 kb on - strandat 7.295 kb on + strandat 7.295 kb on + strandat 7.412 kb on - strandat 7.689 kb on + strand, within DvMF_0006at 7.803 kb on + strand, within DvMF_0006at 7.953 kb on - strand, within DvMF_0006at 7.972 kb on - strand, within DvMF_0006at 8.083 kb on - strand, within DvMF_0006at 8.096 kb on + strand, within DvMF_0006

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1 mg/ml
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5,557 + DvMF_0004 0.57 -0.7
5,601 - DvMF_0004 0.60 -1.0
5,694 - DvMF_0004 0.65 -0.9
5,868 + DvMF_0004 0.75 -0.9
5,868 + DvMF_0004 0.75 -0.2
6,163 + -1.1
6,588 - DvMF_0005 0.23 -1.1
6,739 - DvMF_0005 0.42 -1.0
6,739 - DvMF_0005 0.42 -0.8
6,763 + DvMF_0005 0.45 -1.2
6,831 - DvMF_0005 0.54 -1.0
6,937 + DvMF_0005 0.67 -0.6
6,994 + DvMF_0005 0.74 -1.5
7,210 - -1.0
7,295 + -0.9
7,295 + -0.4
7,412 - -0.5
7,689 + DvMF_0006 0.14 -1.3
7,803 + DvMF_0006 0.32 -1.0
7,953 - DvMF_0006 0.55 +0.5
7,972 - DvMF_0006 0.58 +0.3
8,083 - DvMF_0006 0.75 -0.5
8,096 + DvMF_0006 0.77 -0.7

Or see this region's nucleotide sequence