Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS12120

Experiment: Growth with no stress

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Growth with no stress
2,690,514	-		PFLU_RS12115	0.16	+0.2
2,690,592	+		PFLU_RS12115	0.28	-0.1
2,690,593	-		PFLU_RS12115	0.28	+1.2
2,690,593	-		PFLU_RS12115	0.28	+1.0
2,690,593	-		PFLU_RS12115	0.28	+1.1
2,690,651	+		PFLU_RS12115	0.36	-0.9
2,690,652	-		PFLU_RS12115	0.36	-1.7
2,690,652	-		PFLU_RS12115	0.36	-2.1
2,690,680	+		PFLU_RS12115	0.40	+0.1
2,690,750	+		PFLU_RS12115	0.50	+0.6
2,690,801	+		PFLU_RS12115	0.58	-0.7
2,690,801	+		PFLU_RS12115	0.58	-1.5
2,690,801	+		PFLU_RS12115	0.58	+0.8
2,690,802	-		PFLU_RS12115	0.58	+3.1
2,690,802	-		PFLU_RS12115	0.58	-0.3
2,690,802	-		PFLU_RS12115	0.58	-0.2
2,690,802	-		PFLU_RS12115	0.58	-0.1
2,690,802	-		PFLU_RS12115	0.58	+0.3
2,690,804	+		PFLU_RS12115	0.58	-0.9
2,690,804	+		PFLU_RS12115	0.58	+1.9
2,690,804	+		PFLU_RS12115	0.58	-2.1
2,690,804	+		PFLU_RS12115	0.58	-0.5
2,690,804	+		PFLU_RS12115	0.58	-0.5
2,690,804	+		PFLU_RS12115	0.58	-0.3
2,690,804	+		PFLU_RS12115	0.58	+1.1
2,690,804	+		PFLU_RS12115	0.58	+0.7
2,690,804	+		PFLU_RS12115	0.58	+0.5
2,690,805	-		PFLU_RS12115	0.58	+0.5
2,690,805	-		PFLU_RS12115	0.58	-0.3
2,690,805	-		PFLU_RS12115	0.58	+0.3
2,690,805	-		PFLU_RS12115	0.58	-0.7
2,690,805	-		PFLU_RS12115	0.58	+0.2
2,690,805	-		PFLU_RS12115	0.58	-0.3
2,690,805	-		PFLU_RS12115	0.58	-0.8
2,690,805	-		PFLU_RS12115	0.58	-1.5
2,690,805	-		PFLU_RS12115	0.58	-0.8
2,690,805	-		PFLU_RS12115	0.58	+1.4
2,690,805	-		PFLU_RS12115	0.58	-0.2
2,690,887	+		PFLU_RS12115	0.70	+0.1
2,690,887	+		PFLU_RS12115	0.70	+1.9
2,690,887	+		PFLU_RS12115	0.70	+1.1
2,690,887	+		PFLU_RS12115	0.70	+0.1
2,690,888	-		PFLU_RS12115	0.70	-1.7
2,690,888	-		PFLU_RS12115	0.70	+0.4
2,690,888	-		PFLU_RS12115	0.70	+0.5
2,691,044	+				-0.2
2,691,044	+				+0.0
2,691,044	+				-1.2
2,691,045	-				+1.5
2,691,045	-				+0.1
2,691,052	+				+0.1
2,691,052	+				+1.3
2,691,052	+				+0.3
2,691,053	-				+0.8
2,691,077	+				-0.8
2,691,078	-				-0.9
2,691,078	-				-0.9
2,691,144	+				-2.1
2,691,144	+				-0.7
2,691,144	+				+0.3
2,691,144	+				+0.1
2,691,144	+				-0.5
2,691,144	+				-0.1
2,691,145	-				+0.8
2,691,145	-				-0.1
2,691,145	-				-1.4
2,691,145	-				+1.6
2,691,145	-				-0.2
2,691,145	-				-0.7
2,691,145	-				+1.1
2,691,145	-				+0.3
2,691,153	+				+0.7
2,691,153	+				+1.1
2,691,153	+				-0.1
2,691,153	+				-0.1
2,691,154	-				-1.5
2,691,167	+				+0.1
2,691,302	+				+1.1
2,691,302	+				+0.3
2,691,302	+				+0.8
2,691,302	+				+0.1
2,691,302	+				-1.0
2,691,303	-				+0.9
2,691,303	-				+0.9
2,691,303	-				-1.4
2,691,306	-				-0.9
2,691,379	+				-1.1
2,691,380	-				+0.3
2,691,382	+				-2.4
2,691,395	+				-0.9
2,691,430	+				+1.3
2,691,478	+				+0.5
2,691,478	+				-0.8
2,691,479	-				-0.4
2,691,479	-				-2.4
2,691,479	-				-1.9
2,691,479	-				-2.1
2,691,479	-				-0.8
2,691,479	-				+0.7
2,691,515	+		PFLU_RS12120	0.13	+0.6
2,691,516	-		PFLU_RS12120	0.13	-1.1
2,691,516	-		PFLU_RS12120	0.13	-0.2
2,691,516	-		PFLU_RS12120	0.13	-0.1
2,691,516	-		PFLU_RS12120	0.13	+0.1
2,691,563	-		PFLU_RS12120	0.23	-0.5
2,691,592	+		PFLU_RS12120	0.29	+0.1
2,691,592	+		PFLU_RS12120	0.29	+0.4
2,691,593	-		PFLU_RS12120	0.29	+0.2
2,691,593	-		PFLU_RS12120	0.29	-0.5
2,691,593	-		PFLU_RS12120	0.29	+1.0
2,691,593	-		PFLU_RS12120	0.29	-0.6
2,691,696	-		PFLU_RS12120	0.50	+0.7
2,691,709	+		PFLU_RS12120	0.52	+0.3
2,691,709	+		PFLU_RS12120	0.52	-1.7
2,691,709	+		PFLU_RS12120	0.52	-0.1
2,691,710	-		PFLU_RS12120	0.52	-1.5
2,691,710	-		PFLU_RS12120	0.52	-0.2
2,691,710	-		PFLU_RS12120	0.52	+0.8
2,691,710	-		PFLU_RS12120	0.52	+0.9
2,691,719	-		PFLU_RS12120	0.54	+0.1
2,691,720	+		PFLU_RS12120	0.54	+0.1
2,691,720	+		PFLU_RS12120	0.54	-0.3
2,691,721	-		PFLU_RS12120	0.55	-0.2
2,691,727	+		PFLU_RS12120	0.56	+1.3
2,691,727	+		PFLU_RS12120	0.56	+0.3
2,691,727	+		PFLU_RS12120	0.56	+0.3
2,691,728	-		PFLU_RS12120	0.56	-0.8
2,691,728	-		PFLU_RS12120	0.56	-0.5
2,691,731	+		PFLU_RS12120	0.57	+1.5
2,691,731	+		PFLU_RS12120	0.57	-0.1
2,691,732	-		PFLU_RS12120	0.57	-1.2
2,691,732	-		PFLU_RS12120	0.57	-2.0
2,691,749	+		PFLU_RS12120	0.60	-1.1
2,691,749	+		PFLU_RS12120	0.60	-1.6
2,691,749	+		PFLU_RS12120	0.60	+0.7
2,691,749	+		PFLU_RS12120	0.60	-0.5
2,691,749	+		PFLU_RS12120	0.60	+0.4
2,691,749	+		PFLU_RS12120	0.60	-0.4
2,691,750	-		PFLU_RS12120	0.60	+0.7
2,691,750	-		PFLU_RS12120	0.60	+1.4
2,691,755	+		PFLU_RS12120	0.61	+0.6
2,691,755	+		PFLU_RS12120	0.61	+0.6
2,691,755	+		PFLU_RS12120	0.61	-1.7
2,691,755	+		PFLU_RS12120	0.61	-0.2
2,691,755	+		PFLU_RS12120	0.61	-0.5
2,691,756	-		PFLU_RS12120	0.62	-0.8
2,691,756	-		PFLU_RS12120	0.62	+1.5
2,691,756	-		PFLU_RS12120	0.62	+2.1
2,691,756	-		PFLU_RS12120	0.62	+0.7
2,691,774	-		PFLU_RS12120	0.65	+0.8
2,691,774	-		PFLU_RS12120	0.65	-0.7
2,691,774	-		PFLU_RS12120	0.65	-0.1
2,691,937	+				+2.1
2,691,937	+				+1.1
2,691,937	+				-0.8
2,691,938	-				-0.9
2,691,938	-				+0.3
2,691,938	-				-0.9
2,691,938	-				+1.1
2,691,938	-				-0.6
2,691,951	+				+1.7
2,691,952	-				-0.2
2,691,967	+				+0.5
2,691,968	-				+1.1
2,691,968	-				-1.2
2,691,969	+				+0.4
2,691,969	+				+0.5
2,691,969	+				-0.8
2,691,969	+				+0.3
2,691,969	+				-0.5
2,691,970	-				+1.5
2,691,970	-				+0.7
2,691,970	-				+0.7
2,691,970	-				+1.5
2,691,970	-				+1.8
2,692,055	+				-1.1
2,692,055	+				-1.7
2,692,056	-				-1.2
2,692,056	-				+0.3
2,692,056	-				+0.8
2,692,056	-				-0.1
2,692,056	-				-0.5
2,692,056	-				-0.5
2,692,087	+				+0.5
2,692,098	+				-0.3
2,692,098	+				-0.8
2,692,098	+				-2.6
2,692,099	-				-0.7
2,692,099	-				-0.9
2,692,099	-				-1.5
2,692,167	+				-1.4
2,692,174	+				-2.1
2,692,174	+				+0.1
2,692,174	+				-1.1
2,692,174	+				+0.7
2,692,175	-				+0.8
2,692,175	-				+0.3
2,692,175	-				-0.0
2,692,175	-				-1.7
2,692,183	+				+0.5
2,692,183	+				-2.2
2,692,216	+				-0.7
2,692,255	-		PFLU_RS12125	0.13	-0.5
2,692,255	-		PFLU_RS12125	0.13	-2.7
2,692,255	-		PFLU_RS12125	0.13	+0.6
2,692,333	-		PFLU_RS12125	0.32	-2.2
2,692,333	-		PFLU_RS12125	0.32	+1.1
2,692,350	+		PFLU_RS12125	0.37	-2.7
2,692,351	-		PFLU_RS12125	0.37	+1.7
2,692,386	+		PFLU_RS12125	0.46	-0.4
2,692,414	+		PFLU_RS12125	0.53	+2.1
2,692,414	+		PFLU_RS12125	0.53	-0.2
2,692,414	+		PFLU_RS12125	0.53	-1.5
2,692,414	+		PFLU_RS12125	0.53	+0.1
2,692,415	-		PFLU_RS12125	0.53	-0.4
2,692,415	-		PFLU_RS12125	0.53	+1.1
2,692,415	-		PFLU_RS12125	0.53	+0.9
2,692,415	-		PFLU_RS12125	0.53	-0.5
2,692,483	+		PFLU_RS12125	0.70	+1.1
2,692,528	+		PFLU_RS12125	0.82	-0.9
2,692,528	+		PFLU_RS12125	0.82	-0.9
2,692,529	-		PFLU_RS12125	0.82	+0.3
2,692,529	-		PFLU_RS12125	0.82	+0.3
2,692,529	-		PFLU_RS12125	0.82	+0.7
2,692,535	+		PFLU_RS12125	0.83	-0.2
2,692,535	+		PFLU_RS12125	0.83	-0.5
2,692,535	+		PFLU_RS12125	0.83	-0.5
2,692,535	+		PFLU_RS12125	0.83	-0.2
2,692,535	+		PFLU_RS12125	0.83	-0.3
2,692,535	+		PFLU_RS12125	0.83	+0.2
2,692,535	+		PFLU_RS12125	0.83	+1.7
2,692,535	+		PFLU_RS12125	0.83	-1.4
2,692,535	+		PFLU_RS12125	0.83	-0.6
2,692,535	+		PFLU_RS12125	0.83	-0.3
2,692,536	-		PFLU_RS12125	0.84	-1.2
2,692,536	-		PFLU_RS12125	0.84	-0.5
2,692,536	-		PFLU_RS12125	0.84	-0.1
2,692,594	-				-1.5
2,692,594	-				-0.1
2,692,603	+				-1.5
2,692,603	+				+0.3
2,692,674	+				+0.1
2,692,737	+		PFLU_RS12130	0.20	+0.1
2,692,737	+		PFLU_RS12130	0.20	-0.1
2,692,737	+		PFLU_RS12130	0.20	+0.1
2,692,737	+		PFLU_RS12130	0.20	+1.0
2,692,737	+		PFLU_RS12130	0.20	+0.3
2,692,737	+		PFLU_RS12130	0.20	-0.0
2,692,738	-		PFLU_RS12130	0.20	+2.1
2,692,738	-		PFLU_RS12130	0.20	+0.3
2,692,738	-		PFLU_RS12130	0.20	+1.1
2,692,738	-		PFLU_RS12130	0.20	+1.4
2,692,738	-		PFLU_RS12130	0.20	-0.5
2,692,738	-		PFLU_RS12130	0.20	-1.5
2,692,738	-		PFLU_RS12130	0.20	+0.5
2,692,750	+		PFLU_RS12130	0.23	-0.0
2,692,797	+		PFLU_RS12130	0.33	-0.9
2,692,797	+		PFLU_RS12130	0.33	+0.4
2,692,798	-		PFLU_RS12130	0.34	+1.8
2,692,798	-		PFLU_RS12130	0.34	+0.7
2,692,835	+		PFLU_RS12130	0.42	+0.3
2,692,835	+		PFLU_RS12130	0.42	+0.1
2,692,835	+		PFLU_RS12130	0.42	-0.2
2,692,836	-		PFLU_RS12130	0.42	+0.2
2,692,836	-		PFLU_RS12130	0.42	-0.8
2,692,836	-		PFLU_RS12130	0.42	+2.1
2,692,836	-		PFLU_RS12130	0.42	+1.4
2,692,836	-		PFLU_RS12130	0.42	+0.4
2,692,903	-		PFLU_RS12130	0.57	-1.5
2,692,903	-		PFLU_RS12130	0.57	+0.7
2,692,924	+		PFLU_RS12130	0.62	+0.6
2,692,924	+		PFLU_RS12130	0.62	+0.8
2,692,924	+		PFLU_RS12130	0.62	-0.2
2,692,924	+		PFLU_RS12130	0.62	+0.3
2,692,924	+		PFLU_RS12130	0.62	-1.1
2,692,924	+		PFLU_RS12130	0.62	+0.0
2,692,924	+		PFLU_RS12130	0.62	+1.4
2,692,924	+		PFLU_RS12130	0.62	-1.0
2,692,925	-		PFLU_RS12130	0.62	-0.5
2,692,925	-		PFLU_RS12130	0.62	+0.8
2,692,925	-		PFLU_RS12130	0.62	-0.3
2,692,925	-		PFLU_RS12130	0.62	+0.5
2,692,925	-		PFLU_RS12130	0.62	-1.2
2,692,936	-		PFLU_RS12130	0.64	+2.4
2,692,945	-		PFLU_RS12130	0.66	+1.4
2,692,945	-		PFLU_RS12130	0.66	-2.1
2,692,945	-		PFLU_RS12130	0.66	-2.8