Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03778

Experiment: PYE with Vancomycin 0.007 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Vancomycin 0.007 mg/ml
3,943,721	+		CCNA_03777	0.25	-1.2
3,943,723	+		CCNA_03777	0.25	-1.4
3,943,729	-		CCNA_03777	0.25	-0.3
3,943,729	-		CCNA_03777	0.25	-0.6
3,943,729	-		CCNA_03777	0.25	+0.3
3,943,747	+		CCNA_03777	0.27	+0.8
3,943,768	-		CCNA_03777	0.29	-1.2
3,943,770	-		CCNA_03777	0.29	+0.6
3,943,787	+		CCNA_03777	0.31	-0.9
3,943,792	+		CCNA_03777	0.31	-0.4
3,943,800	-		CCNA_03777	0.32	-0.8
3,943,870	+		CCNA_03777	0.39	-0.2
3,943,878	-		CCNA_03777	0.40	-0.5
3,943,883	-		CCNA_03777	0.40	-0.2
3,943,883	-		CCNA_03777	0.40	-1.5
3,943,884	-		CCNA_03777	0.40	+1.7
3,943,923	-		CCNA_03777	0.44	-0.7
3,944,050	+		CCNA_03777	0.56	-1.9
3,944,094	+		CCNA_03777	0.60	-2.2
3,944,099	+		CCNA_03777	0.60	-0.1
3,944,099	+		CCNA_03777	0.60	-2.6
3,944,102	-		CCNA_03777	0.61	-0.2
3,944,102	-		CCNA_03777	0.61	-0.2
3,944,107	-		CCNA_03777	0.61	-1.4
3,944,112	-		CCNA_03777	0.62	-0.8
3,944,118	+		CCNA_03777	0.62	-1.2
3,944,132	+		CCNA_03777	0.64	+0.4
3,944,177	+				+4.8
3,944,182	+		CCNA_03777	0.68	+1.2
3,944,190	-		CCNA_03777	0.69	-0.2
3,944,212	-		CCNA_03777	0.71	-1.3
3,944,212	-		CCNA_03777	0.71	-1.3
3,944,221	-		CCNA_03777	0.72	-0.1
3,944,253	+		CCNA_03777	0.75	-0.8
3,944,253	+		CCNA_03777	0.75	-2.5
3,944,261	-		CCNA_03777	0.76	+0.3
3,944,261	-		CCNA_03777	0.76	+0.3
3,944,261	-		CCNA_03777	0.76	-0.5
3,944,298	+		CCNA_03777	0.79	-1.2
3,944,306	-		CCNA_03777	0.80	-0.7
3,944,333	-		CCNA_03777	0.83	+0.3
3,944,353	+		CCNA_03777	0.85	-1.3
3,944,361	+		CCNA_03777	0.85	+1.1
3,944,362	-		CCNA_03777	0.85	-1.1
3,944,369	-		CCNA_03777	0.86	-0.0
3,944,393	-		CCNA_03777	0.88	-0.4
3,944,405	-		CCNA_03777	0.90	-1.2
3,944,420	-				+0.6
3,944,420	-				+0.8
3,944,420	-				+0.4
3,944,452	-				-0.2
3,944,473	-				+0.3
3,944,478	+				-0.5
3,944,478	-				-0.6
3,944,492	-				+0.1
3,944,498	+				-0.6
3,944,499	+				-0.5
3,944,526	+				-1.0
3,944,536	+				+0.0
3,944,547	+				+0.3
3,944,555	-				+1.5
3,944,593	-				+2.9
3,944,655	+				-1.1
3,944,655	+				-1.1
3,944,664	+				-1.3
3,944,791	+				-1.8
3,944,839	+		CCNA_03778	0.16	-0.7
3,944,930	+		CCNA_03778	0.28	-0.7
3,944,946	-		CCNA_03778	0.30	+1.2
3,945,028	+		CCNA_03778	0.41	-0.9
3,945,028	+		CCNA_03778	0.41	-0.7
3,945,028	+		CCNA_03778	0.41	-2.0
3,945,036	-		CCNA_03778	0.42	-0.9
3,945,084	+		CCNA_03778	0.49	-1.7
3,945,159	+		CCNA_03778	0.59	-1.0
3,945,203	+		CCNA_03778	0.65	-2.2
3,945,237	+		CCNA_03778	0.69	+3.5
3,945,325	+		CCNA_03778	0.81	-0.2
3,945,417	+				-0.2
3,945,497	+				+0.9
3,945,596	+		CCNA_03779	0.13	-1.8
3,945,597	+		CCNA_03779	0.13	+0.3
3,945,597	+		CCNA_03779	0.13	-1.9
3,945,607	+		CCNA_03779	0.16	+1.1
3,945,615	-		CCNA_03779	0.18	+1.6
3,945,615	-		CCNA_03779	0.18	+0.3
3,945,626	+		CCNA_03779	0.22	+0.2
3,945,648	-		CCNA_03779	0.28	-0.1
3,945,744	-		CCNA_03779	0.57	-0.6
3,945,746	+		CCNA_03779	0.58	+0.3
3,945,867	+				-0.2
3,945,867	+				+0.4
3,945,867	+				+0.0
3,945,867	+				-0.4
3,945,867	+				+1.0
3,945,875	+				+1.1
3,945,875	+				-1.7
3,945,875	+				-0.4
3,945,875	+				+1.0
3,945,875	+				+3.7
3,945,875	+				-2.1
3,945,875	-				-0.4
3,945,875	-				+0.2
3,945,883	-				-1.3
3,945,883	-				-1.3
3,945,883	-				+0.0
3,945,883	-				-1.4
3,945,883	-				-0.2
3,945,884	-				-0.3
3,945,975	-				+0.8
3,945,989	+				+0.1
3,946,001	+				+0.5
3,946,025	+				-0.5
3,946,038	-				-1.5
3,946,058	+				+0.7
3,946,067	+				-0.2
3,946,067	+				-0.0
3,946,097	-				-2.0
3,946,119	+				+3.2
3,946,119	+				+0.4
3,946,119	+				+0.7
3,946,127	-				+2.1
3,946,127	-				-0.1
3,946,136	+				+0.7
3,946,146	+				+0.5
3,946,216	-				+0.3
3,946,242	-				-1.1
3,946,242	-				+0.3
3,946,306	-				+0.9
3,946,306	-				-0.3
3,946,306	-				-1.5
3,946,312	+				+0.0
3,946,338	-				-1.7
3,946,346	-				-0.9
3,946,368	+				+0.1
3,946,372	+				-0.3
3,946,375	+				-0.3
3,946,383	-				-1.0
3,946,390	+				-0.3
3,946,398	-				+0.8
3,946,434	+				-0.5