Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03547

Experiment: PYE with Vancomycin 0.007 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Vancomycin 0.007 mg/ml
3,702,374	+		CCNA_03545	0.69	-0.1
3,702,482	+				+0.6
3,702,525	-				-0.2
3,702,539	+				-0.5
3,702,539	+				+0.6
3,702,548	-				-0.6
3,702,628	-		CCNA_03546	0.14	-0.9
3,702,662	-		CCNA_03546	0.20	+0.2
3,702,670	+		CCNA_03546	0.22	+0.8
3,702,670	+		CCNA_03546	0.22	-0.1
3,702,670	+		CCNA_03546	0.22	+1.9
3,702,670	+		CCNA_03546	0.22	-0.2
3,702,670	+		CCNA_03546	0.22	+0.2
3,702,678	-		CCNA_03546	0.23	-1.5
3,702,678	-		CCNA_03546	0.23	-0.2
3,702,683	-		CCNA_03546	0.24	-2.1
3,702,683	-		CCNA_03546	0.24	-0.1
3,702,697	-		CCNA_03546	0.27	+0.2
3,702,788	-		CCNA_03546	0.44	-0.3
3,702,793	+		CCNA_03546	0.45	+1.1
3,702,793	+		CCNA_03546	0.45	-1.2
3,702,793	+		CCNA_03546	0.45	+0.2
3,702,793	+		CCNA_03546	0.45	-1.9
3,702,801	-		CCNA_03546	0.47	-1.6
3,702,801	-		CCNA_03546	0.47	-1.2
3,702,801	-		CCNA_03546	0.47	+0.3
3,702,838	+		CCNA_03546	0.54	-1.5
3,702,840	-		CCNA_03546	0.54	-0.3
3,702,845	-		CCNA_03546	0.55	-1.0
3,702,846	-		CCNA_03546	0.56	+0.2
3,702,846	-		CCNA_03546	0.56	-0.6
3,702,868	-		CCNA_03546	0.60	-0.5
3,702,873	-		CCNA_03546	0.61	-0.9
3,702,929	+		CCNA_03546	0.71	-0.6
3,702,972	-		CCNA_03546	0.80	-0.5
3,702,972	-		CCNA_03546	0.80	+0.5
3,702,987	-		CCNA_03546	0.83	-1.2
3,702,997	+		CCNA_03546	0.84	-0.4
3,703,002	+		CCNA_03546	0.85	-1.0
3,703,029	+				+0.3
3,703,030	-				+2.3
3,703,060	+				+1.0
3,703,060	+				+0.2
3,703,066	-				-1.6
3,703,066	-				+0.8
3,703,068	-				-2.8
3,703,119	-				-1.9
3,703,128	+				-1.5
3,703,140	-				+1.6
3,703,246	+		CCNA_03547	0.14	-1.1
3,703,266	+		CCNA_03547	0.16	-2.1
3,703,274	-		CCNA_03547	0.17	-1.3
3,703,315	+		CCNA_03547	0.21	-0.3
3,703,328	-		CCNA_03547	0.22	-2.2
3,703,330	-		CCNA_03547	0.22	-0.2
3,703,361	+		CCNA_03547	0.25	-1.9
3,703,364	-		CCNA_03547	0.26	-0.9
3,703,371	-		CCNA_03547	0.26	-0.5
3,703,396	+		CCNA_03547	0.29	-1.1
3,703,489	+		CCNA_03547	0.37	+0.2
3,703,492	-		CCNA_03547	0.38	-1.6
3,703,509	+		CCNA_03547	0.39	-0.9
3,703,511	+		CCNA_03547	0.39	-1.7
3,703,517	-		CCNA_03547	0.40	-0.6
3,703,517	-		CCNA_03547	0.40	+1.6
3,703,517	-		CCNA_03547	0.40	-0.2
3,703,528	+		CCNA_03547	0.41	-0.9
3,703,530	+		CCNA_03547	0.41	-2.3
3,703,567	+		CCNA_03547	0.45	+2.1
3,703,574	+		CCNA_03547	0.45	-0.1
3,703,575	-		CCNA_03547	0.46	+1.1
3,703,690	-		CCNA_03547	0.56	-3.2
3,703,691	+		CCNA_03547	0.57	-0.1
3,703,696	+		CCNA_03547	0.57	-0.8
3,703,699	-		CCNA_03547	0.57	-0.9
3,703,699	-		CCNA_03547	0.57	-2.1
3,703,699	-		CCNA_03547	0.57	-0.9
3,703,720	+		CCNA_03547	0.59	-1.2
3,703,756	+		CCNA_03547	0.63	-2.1
3,703,756	+		CCNA_03547	0.63	-1.3
3,703,756	+				+1.3
3,703,763	+		CCNA_03547	0.63	+0.6
3,703,764	-		CCNA_03547	0.63	+0.5
3,703,782	+		CCNA_03547	0.65	+0.2
3,703,790	-		CCNA_03547	0.66	-1.3
3,703,848	+		CCNA_03547	0.71	-2.6
3,703,904	+		CCNA_03547	0.77	+2.1
3,703,927	-		CCNA_03547	0.79	-2.0
3,703,935	+		CCNA_03547	0.80	-1.9
3,703,940	+		CCNA_03547	0.80	-0.5
3,703,940	+		CCNA_03547	0.80	-0.1
3,703,940	+		CCNA_03547	0.80	-1.4
3,703,948	-		CCNA_03547	0.81	-1.2
3,703,968	+		CCNA_03547	0.83	-0.7
3,703,986	+		CCNA_03547	0.84	-1.9
3,704,004	-		CCNA_03547	0.86	+0.1
3,704,004	-		CCNA_03547	0.86	-2.3
3,704,056	-				+0.1
3,704,082	+				-0.7
3,704,086	-				-0.4
3,704,088	-				-2.4
3,704,110	+				-0.2
3,704,199	+				+2.1
3,704,199	+				-1.6
3,704,199	+				-1.6
3,704,199	+				-1.2
3,704,199	+				-0.9
3,704,199	+				-0.3
3,704,199	+				+1.2
3,704,202	-				-0.2
3,704,207	-				+0.5
3,704,207	-				-2.1
3,704,209	+				+2.6
3,704,209	+				-1.1
3,704,214	+				-0.5
3,704,319	+				+0.3
3,704,320	+				+0.8
3,704,362	+				+0.2
3,704,370	-				-0.3
3,704,398	+				-1.3
3,704,398	+				+0.6
3,704,398	+				-0.8
3,704,398	+				-0.5
3,704,400	+				+0.6
3,704,483	+		CCNA_03548	0.16	+0.1
3,704,491	-		CCNA_03548	0.16	+0.2
3,704,535	-		CCNA_03548	0.19	+0.3
3,704,567	+		CCNA_03548	0.22	+0.8
3,704,567	+		CCNA_03548	0.22	+0.2
3,704,575	-		CCNA_03548	0.22	-0.2
3,704,666	-		CCNA_03548	0.29	-0.3
3,704,669	-		CCNA_03548	0.29	-2.2
3,704,944	+		CCNA_03548	0.49	-0.1
3,704,961	+		CCNA_03548	0.50	+0.3
3,705,013	+		CCNA_03548	0.54	-0.2
3,705,023	+		CCNA_03548	0.54	-2.0
3,705,023	+		CCNA_03548	0.54	+0.1
3,705,023	+		CCNA_03548	0.54	-0.6
3,705,070	-		CCNA_03548	0.58	-0.7