Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03539

Experiment: PYE with Vancomycin 0.007 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Vancomycin 0.007 mg/ml
3,696,073	-		CCNA_03537	0.82	+1.5
3,696,088	-		CCNA_03537	0.86	+0.7
3,696,098	-		CCNA_03537	0.89	+1.3
3,696,133	-				-4.1
3,696,178	-				-0.3
3,696,233	-				+0.6
3,696,238	-		CCNA_03538	0.10	+0.0
3,696,279	-		CCNA_03538	0.15	-0.8
3,696,279	-		CCNA_03538	0.15	-0.5
3,696,279	-		CCNA_03538	0.15	-1.4
3,696,279	-		CCNA_03538	0.15	+0.4
3,696,293	-		CCNA_03538	0.16	-2.4
3,696,302	-		CCNA_03538	0.17	-0.7
3,696,340	+		CCNA_03538	0.22	+0.3
3,696,348	-		CCNA_03538	0.23	-1.1
3,696,370	+		CCNA_03538	0.25	-1.9
3,696,400	+		CCNA_03538	0.29	-0.6
3,696,408	+		CCNA_03538	0.30	-1.1
3,696,408	+		CCNA_03538	0.30	-0.4
3,696,408	+		CCNA_03538	0.30	+0.8
3,696,408	+		CCNA_03538	0.30	-0.1
3,696,408	+		CCNA_03538	0.30	-0.3
3,696,408	+		CCNA_03538	0.30	-0.8
3,696,408	+		CCNA_03538	0.30	-0.4
3,696,408	+		CCNA_03538	0.30	-0.3
3,696,416	-		CCNA_03538	0.31	-1.3
3,696,416	-		CCNA_03538	0.31	-1.7
3,696,416	-		CCNA_03538	0.31	-1.3
3,696,416	-		CCNA_03538	0.31	-1.7
3,696,416	-		CCNA_03538	0.31	+2.0
3,696,416	-		CCNA_03538	0.31	-0.3
3,696,416	-		CCNA_03538	0.31	-0.1
3,696,416	-		CCNA_03538	0.31	-0.4
3,696,416	-		CCNA_03538	0.31	-1.6
3,696,416	-		CCNA_03538	0.31	+0.8
3,696,422	-		CCNA_03538	0.31	-1.1
3,696,474	+		CCNA_03538	0.37	-0.4
3,696,489	+		CCNA_03538	0.39	-1.1
3,696,516	-		CCNA_03538	0.42	-0.5
3,696,524	+		CCNA_03538	0.43	+0.3
3,696,593	-		CCNA_03538	0.51	+0.2
3,696,602	+		CCNA_03538	0.52	-1.7
3,696,607	+		CCNA_03538	0.53	-0.9
3,696,636	+		CCNA_03538	0.56	+0.7
3,696,644	-		CCNA_03538	0.57	+0.3
3,696,663	-		CCNA_03538	0.59	+0.4
3,696,668	-		CCNA_03538	0.60	-1.2
3,696,761	+		CCNA_03538	0.70	-2.6
3,696,785	+		CCNA_03538	0.73	-0.2
3,696,932	-		CCNA_03538	0.90	-2.5
3,696,939	-				-0.9
3,696,959	+				-0.3
3,696,973	-				+2.5
3,696,999	-				+2.6
3,697,003	-				-0.7
3,697,027	+				-2.3
3,697,027	+				+0.5
3,697,027	+				-1.4
3,697,027	+				+0.6
3,697,027	+				+0.0
3,697,027	+				+1.0
3,697,027	+				-0.9
3,697,027	+				-1.7
3,697,027	+				+0.2
3,697,035	-				-0.3
3,697,035	-				-0.8
3,697,035	-				-3.0
3,697,035	-				+0.2
3,697,052	+				-0.4
3,697,123	-		CCNA_03539	0.20	-1.8
3,697,150	+		CCNA_03539	0.28	-0.7
3,697,159	-		CCNA_03539	0.30	-2.3
3,697,159	-		CCNA_03539	0.30	-0.5
3,697,176	+		CCNA_03539	0.35	-2.0
3,697,181	+		CCNA_03539	0.36	-0.3
3,697,181	+		CCNA_03539	0.36	+1.6
3,697,181	+		CCNA_03539	0.36	-1.6
3,697,181	+		CCNA_03539	0.36	-2.0
3,697,184	-		CCNA_03539	0.37	-1.3
3,697,189	-		CCNA_03539	0.39	-1.0
3,697,196	+		CCNA_03539	0.40	-0.9
3,697,199	-		CCNA_03539	0.41	-1.7
3,697,204	-		CCNA_03539	0.43	-1.5
3,697,275	+		CCNA_03539	0.62	+0.8
3,697,283	+		CCNA_03539	0.64	-0.4
3,697,286	-		CCNA_03539	0.65	+2.0
3,697,306	-		CCNA_03539	0.71	-1.2
3,697,312	+		CCNA_03539	0.72	-2.1
3,697,319	+		CCNA_03539	0.74	+0.3
3,697,331	-		CCNA_03539	0.78	-1.3
3,697,357	+		CCNA_03539	0.85	+0.0
3,697,365	-		CCNA_03539	0.87	-2.2
3,697,375	+				-0.4
3,697,383	-				-1.5
3,697,383	-				+2.0
3,697,424	+				+0.7
3,697,426	+				-0.3
3,697,457	+				-0.5
3,697,457	+				-0.6
3,697,457	+				-0.3
3,697,465	-				-1.5
3,697,465	-				-1.2
3,697,465	-				-0.9
3,697,476	-		CCNA_03540	0.10	-2.4
3,697,479	-		CCNA_03540	0.11	-0.3
3,697,481	+		CCNA_03540	0.11	-0.7
3,697,488	-		CCNA_03540	0.12	+1.3
3,697,489	-		CCNA_03540	0.12	-0.7
3,697,501	+		CCNA_03540	0.14	-1.1
3,697,501	+		CCNA_03540	0.14	-1.6
3,697,518	+		CCNA_03540	0.17	+1.9
3,697,582	-		CCNA_03540	0.26	-0.8
3,697,603	+		CCNA_03540	0.30	-0.6
3,697,611	-		CCNA_03540	0.31	-1.4
3,697,611	-		CCNA_03540	0.31	-0.2
3,697,611	-		CCNA_03540	0.31	+0.3
3,697,638	-		CCNA_03540	0.35	+1.3
3,697,638	-		CCNA_03540	0.35	-1.1
3,697,716	-		CCNA_03540	0.47	-0.2
3,697,722	-		CCNA_03540	0.48	-0.7
3,697,726	-		CCNA_03540	0.48	+0.5
3,697,747	+		CCNA_03540	0.52	-1.0
3,697,755	+		CCNA_03540	0.53	-1.5
3,697,755	-		CCNA_03540	0.53	-1.5
3,697,757	+		CCNA_03540	0.53	+2.7
3,697,757	+		CCNA_03540	0.53	-0.4
3,697,757	-		CCNA_03540	0.53	+0.0
3,697,765	-		CCNA_03540	0.54	-0.5
3,697,765	-		CCNA_03540	0.54	-1.7
3,697,784	+		CCNA_03540	0.57	-0.3
3,697,789	+		CCNA_03540	0.58	-1.2
3,697,809	-		CCNA_03540	0.61	-1.5
3,697,830	+		CCNA_03540	0.64	-2.6
3,697,836	+		CCNA_03540	0.65	-1.9
3,697,836	+		CCNA_03540	0.65	-0.3
3,697,836	+		CCNA_03540	0.65	-1.9
3,697,842	+		CCNA_03540	0.66	-0.6
3,697,844	-		CCNA_03540	0.66	-0.1
3,697,844	-		CCNA_03540	0.66	-1.7
3,697,856	+		CCNA_03540	0.68	-1.6
3,697,857	+		CCNA_03540	0.68	-1.2
3,697,871	-		CCNA_03540	0.70	+2.0
3,697,873	+		CCNA_03540	0.71	+0.1
3,697,883	-		CCNA_03540	0.72	-0.5
3,697,890	+		CCNA_03540	0.73	+0.3
3,697,948	+		CCNA_03540	0.82	-0.5
3,697,960	+		CCNA_03540	0.84	-2.7
3,697,960	+		CCNA_03540	0.84	-0.3
3,698,022	+				-0.8
3,698,022	+				-0.4
3,698,027	+				-1.2
3,698,030	-				-1.1
3,698,035	-				-0.4
3,698,087	+				+1.0
3,698,191	-		CCNA_03541	0.13	+1.6
3,698,216	+		CCNA_03541	0.16	+0.6
3,698,224	-		CCNA_03541	0.17	+0.6
3,698,226	+		CCNA_03541	0.17	-0.1
3,698,231	+		CCNA_03541	0.17	+1.8
3,698,231	+		CCNA_03541	0.17	+0.5
3,698,231	+		CCNA_03541	0.17	-2.1
3,698,234	-		CCNA_03541	0.18	-1.1
3,698,239	-		CCNA_03541	0.18	-0.5
3,698,240	-		CCNA_03541	0.18	+0.1
3,698,249	-		CCNA_03541	0.20	+0.2
3,698,265	+		CCNA_03541	0.21	-1.5
3,698,273	-		CCNA_03541	0.22	+0.3
3,698,312	+		CCNA_03541	0.27	-0.6
3,698,312	+		CCNA_03541	0.27	+0.8
3,698,312	+		CCNA_03541	0.27	-1.8
3,698,312	+		CCNA_03541	0.27	-1.7
3,698,312	+		CCNA_03541	0.27	-2.5
3,698,320	-		CCNA_03541	0.28	-2.4
3,698,320	-		CCNA_03541	0.28	+1.0
3,698,330	-		CCNA_03541	0.29	+0.6
3,698,355	+		CCNA_03541	0.32	+0.5
3,698,355	+		CCNA_03541	0.32	-0.8
3,698,355	+		CCNA_03541	0.32	-1.3
3,698,363	-		CCNA_03541	0.33	-0.9
3,698,363	-		CCNA_03541	0.33	-0.4
3,698,363	-		CCNA_03541	0.33	-1.0
3,698,373	-		CCNA_03541	0.34	-1.9
3,698,380	+		CCNA_03541	0.35	-0.1
3,698,383	-		CCNA_03541	0.35	-1.1
3,698,408	+		CCNA_03541	0.38	-0.1
3,698,408	+		CCNA_03541	0.38	-0.3