Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03417

Experiment: PYE with Vancomycin 0.007 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Vancomycin 0.007 mg/ml
3,582,850	+				-0.8
3,582,855	+				-0.1
3,582,910	+		CCNA_03416	0.14	+0.8
3,582,928	-		CCNA_03416	0.16	+0.9
3,582,936	+		CCNA_03416	0.17	-0.7
3,582,944	-		CCNA_03416	0.18	-0.4
3,582,954	+		CCNA_03416	0.19	-2.8
3,582,962	-		CCNA_03416	0.19	-0.6
3,582,969	-		CCNA_03416	0.20	+0.1
3,583,036	-		CCNA_03416	0.27	-1.2
3,583,058	-		CCNA_03416	0.29	-0.9
3,583,058	-		CCNA_03416	0.29	-1.1
3,583,069	+		CCNA_03416	0.30	-0.7
3,583,096	+		CCNA_03416	0.33	-0.7
3,583,096	+		CCNA_03416	0.33	-2.3
3,583,096	-		CCNA_03416	0.33	-1.7
3,583,102	+		CCNA_03416	0.33	-1.9
3,583,112	-		CCNA_03416	0.34	-1.9
3,583,132	-		CCNA_03416	0.36	-1.0
3,583,148	+		CCNA_03416	0.38	+0.2
3,583,168	-		CCNA_03416	0.40	-2.3
3,583,170	+		CCNA_03416	0.40	+0.4
3,583,201	+		CCNA_03416	0.43	-1.9
3,583,209	-		CCNA_03416	0.44	+0.5
3,583,228	+		CCNA_03416	0.46	-1.5
3,583,236	-		CCNA_03416	0.47	+0.3
3,583,280	+		CCNA_03416	0.51	-1.5
3,583,288	-		CCNA_03416	0.52	-1.9
3,583,295	+		CCNA_03416	0.53	+0.5
3,583,295	+		CCNA_03416	0.53	-0.6
3,583,295	+		CCNA_03416	0.53	-1.1
3,583,295	+		CCNA_03416	0.53	-0.9
3,583,295	+		CCNA_03416	0.53	-1.2
3,583,295	+		CCNA_03416	0.53	+0.2
3,583,295	+		CCNA_03416	0.53	-1.3
3,583,303	-		CCNA_03416	0.53	-1.2
3,583,303	-		CCNA_03416	0.53	-0.8
3,583,303	-		CCNA_03416	0.53	-0.2
3,583,303	-		CCNA_03416	0.53	+0.5
3,583,312	+		CCNA_03416	0.54	-0.0
3,583,329	-		CCNA_03416	0.56	-2.2
3,583,346	-		CCNA_03416	0.58	-1.1
3,583,351	-		CCNA_03416	0.58	-0.1
3,583,357	+		CCNA_03416	0.59	-1.2
3,583,357	+		CCNA_03416	0.59	-0.9
3,583,365	-		CCNA_03416	0.60	-0.7
3,583,365	-		CCNA_03416	0.60	+0.2
3,583,376	-		CCNA_03416	0.61	-1.1
3,583,381	-		CCNA_03416	0.61	+1.4
3,583,402	-		CCNA_03416	0.63	-0.5
3,583,406	-		CCNA_03416	0.64	+0.3
3,583,409	+		CCNA_03416	0.64	-2.0
3,583,409	+		CCNA_03416	0.64	-0.4
3,583,409	+		CCNA_03416	0.64	+0.0
3,583,409	+		CCNA_03416	0.64	-0.4
3,583,417	-		CCNA_03416	0.65	-0.9
3,583,417	-		CCNA_03416	0.65	-0.3
3,583,417	-		CCNA_03416	0.65	-2.2
3,583,424	+		CCNA_03416	0.65	-0.2
3,583,479	+		CCNA_03416	0.71	-1.2
3,583,487	-		CCNA_03416	0.72	-0.4
3,583,498	-		CCNA_03416	0.73	-1.0
3,583,543	+		CCNA_03416	0.77	-0.6
3,583,543	+		CCNA_03416	0.77	-1.8
3,583,543	+		CCNA_03416	0.77	-0.7
3,583,543	+		CCNA_03416	0.77	-0.7
3,583,543	+		CCNA_03416	0.77	+0.2
3,583,543	+		CCNA_03416	0.77	-0.2
3,583,543	+		CCNA_03416	0.77	-0.4
3,583,551	-		CCNA_03416	0.78	-0.1
3,583,551	-		CCNA_03416	0.78	-0.3
3,583,551	-		CCNA_03416	0.78	-2.1
3,583,551	-		CCNA_03416	0.78	-1.1
3,583,551	-		CCNA_03416	0.78	-1.2
3,583,551	-		CCNA_03416	0.78	-1.0
3,583,551	-		CCNA_03416	0.78	+0.2
3,583,551	-		CCNA_03416	0.78	+0.8
3,583,600	+		CCNA_03416	0.83	+0.7
3,583,600	+		CCNA_03416	0.83	+0.1
3,583,600	+		CCNA_03416	0.83	-0.5
3,583,600	+		CCNA_03416	0.83	-3.6
3,583,608	-		CCNA_03416	0.84	-0.1
3,583,608	-		CCNA_03416	0.84	-1.7
3,583,608	-		CCNA_03416	0.84	+1.0
3,583,608	-		CCNA_03416	0.84	-1.2
3,583,608	-		CCNA_03416	0.84	-0.9
3,583,608	-		CCNA_03416	0.84	+0.0
3,583,608	-		CCNA_03416	0.84	-0.1
3,583,608	-		CCNA_03416	0.84	-2.6
3,583,608	-		CCNA_03416	0.84	+0.3
3,583,608	-		CCNA_03416	0.84	-2.5
3,583,608	-		CCNA_03416	0.84	+0.8
3,583,608	-		CCNA_03416	0.84	-2.6
3,583,610	+		CCNA_03416	0.84	+1.0
3,583,610	+		CCNA_03416	0.84	-1.7
3,583,610	+		CCNA_03416	0.84	-2.1
3,583,610	+		CCNA_03416	0.84	+1.0
3,583,612	+		CCNA_03416	0.84	+0.0
3,583,618	-		CCNA_03416	0.85	+0.3
3,583,618	-		CCNA_03416	0.85	-0.7
3,583,620	-		CCNA_03416	0.85	+0.4
3,583,643	+		CCNA_03416	0.87	-0.3
3,583,646	-		CCNA_03416	0.88	-0.6
3,583,648	+		CCNA_03416	0.88	-0.1
3,583,648	+		CCNA_03416	0.88	-0.2
3,583,651	-		CCNA_03416	0.88	+0.1
3,583,651	-		CCNA_03416	0.88	+0.4
3,583,651	-		CCNA_03416	0.88	+1.2
3,583,651	-		CCNA_03416	0.88	-0.9
3,583,656	-		CCNA_03416	0.89	-0.9
3,583,656	-		CCNA_03416	0.89	+0.1
3,583,656	-		CCNA_03416	0.89	+1.0
3,583,656	-		CCNA_03416	0.89	-0.2
3,583,742	-				-0.3
3,583,754	-				+0.1
3,583,848	-				+2.4
3,583,865	+				-0.6
3,583,878	+				-1.1
3,583,883	+				-1.0
3,583,883	+				-0.7
3,583,891	-				-1.4
3,583,899	+				-1.5
3,583,996	-		CCNA_03417	0.17	-1.6
3,584,001	-		CCNA_03417	0.17	-2.1
3,584,007	+		CCNA_03417	0.18	-0.0
3,584,007	+		CCNA_03417	0.18	+1.9
3,584,007	+		CCNA_03417	0.18	-0.4
3,584,012	+		CCNA_03417	0.19	-2.1
3,584,012	+		CCNA_03417	0.19	-1.2
3,584,012	+		CCNA_03417	0.19	-0.6
3,584,020	-		CCNA_03417	0.19	+0.8
3,584,020	-		CCNA_03417	0.19	-0.2
3,584,020	-		CCNA_03417	0.19	-0.8
3,584,020	-		CCNA_03417	0.19	-1.3
3,584,020	-		CCNA_03417	0.19	-0.6
3,584,020	-		CCNA_03417	0.19	-0.9
3,584,025	+		CCNA_03417	0.20	-0.6
3,584,091	-		CCNA_03417	0.27	-2.4
3,584,091	-		CCNA_03417	0.27	-1.2
3,584,102	+		CCNA_03417	0.28	+0.6
3,584,103	+		CCNA_03417	0.28	-1.9
3,584,110	-		CCNA_03417	0.29	-2.2
3,584,111	-		CCNA_03417	0.29	+0.7
3,584,116	-		CCNA_03417	0.30	-0.7
3,584,120	+		CCNA_03417	0.30	-1.0
3,584,154	+		CCNA_03417	0.34	+0.3
3,584,154	+		CCNA_03417	0.34	-2.4
3,584,187	+		CCNA_03417	0.37	-1.0
3,584,198	+		CCNA_03417	0.39	-0.5
3,584,198	+		CCNA_03417	0.39	+0.8
3,584,198	+		CCNA_03417	0.39	+0.1
3,584,201	-		CCNA_03417	0.39	-0.1
3,584,209	+		CCNA_03417	0.40	-0.8
3,584,217	-		CCNA_03417	0.41	+1.3
3,584,228	-		CCNA_03417	0.42	-0.6
3,584,244	+		CCNA_03417	0.44	-0.1
3,584,297	+		CCNA_03417	0.49	-1.4
3,584,297	+		CCNA_03417	0.49	-1.1
3,584,302	+		CCNA_03417	0.50	+1.4
3,584,302	+				+2.2
3,584,302	+		CCNA_03417	0.50	-0.7
3,584,310	-		CCNA_03417	0.51	-0.8
3,584,320	-		CCNA_03417	0.52	-0.8
3,584,337	+		CCNA_03417	0.54	-0.8
3,584,337	+		CCNA_03417	0.54	-0.8
3,584,345	-		CCNA_03417	0.55	-2.5
3,584,345	-		CCNA_03417	0.55	-0.7
3,584,345	-		CCNA_03417	0.55	+0.8
3,584,394	-		CCNA_03417	0.60	-0.6
3,584,400	+		CCNA_03417	0.60	-0.4
3,584,408	-		CCNA_03417	0.61	-0.6
3,584,425	-		CCNA_03417	0.63	-1.9
3,584,434	+		CCNA_03417	0.64	-1.0
3,584,444	+		CCNA_03417	0.65	-0.3
3,584,449	+		CCNA_03417	0.66	-0.3
3,584,454	+		CCNA_03417	0.66	-1.2
3,584,455	-		CCNA_03417	0.66	-0.8
3,584,514	+		CCNA_03417	0.73	-1.3
3,584,522	-		CCNA_03417	0.74	-1.0
3,584,603	-		CCNA_03417	0.82	-0.2
3,584,615	+		CCNA_03417	0.84	-0.2
3,584,615	+		CCNA_03417	0.84	-1.1
3,584,618	-		CCNA_03417	0.84	+0.3
3,584,623	-		CCNA_03417	0.85	-1.3
3,584,660	+		CCNA_03417	0.89	-0.2
3,584,668	-		CCNA_03417	0.90	-0.6
3,584,723	-				-0.6
3,584,723	-				+0.2
3,584,723	-				+0.6
3,584,766	+				+0.6
3,584,767	+				+1.4
3,584,768	-				-1.2
3,584,854	-		CCNA_03418	0.18	-1.0
3,584,865	+		CCNA_03418	0.20	-1.4
3,584,873	-		CCNA_03418	0.22	-0.6
3,584,883	+		CCNA_03418	0.24	-1.3
3,584,883	+		CCNA_03418	0.24	-0.3
3,584,891	+		CCNA_03418	0.26	-0.4
3,584,899	+		CCNA_03418	0.28	+0.7
3,584,907	-		CCNA_03418	0.29	-0.8
3,584,925	+		CCNA_03418	0.33	+1.0
3,584,933	-		CCNA_03418	0.35	-0.0
3,584,952	+		CCNA_03418	0.39	+0.6
3,584,980	+		CCNA_03418	0.45	+0.6
3,585,017	-		CCNA_03418	0.53	-1.5
3,585,052	-		CCNA_03418	0.60	-2.5
3,585,063	+		CCNA_03418	0.62	-1.4
3,585,073	+		CCNA_03418	0.64	+0.2
3,585,076	-		CCNA_03418	0.65	+0.6
3,585,113	+		CCNA_03418	0.73	-0.7
3,585,118	+		CCNA_03418	0.74	-1.5
3,585,119	+		CCNA_03418	0.74	-0.2
3,585,119	+		CCNA_03418	0.74	-0.3
3,585,119	+		CCNA_03418	0.74	-1.8
3,585,121	-		CCNA_03418	0.74	-1.0
3,585,127	-		CCNA_03418	0.76	+0.0
3,585,143	-		CCNA_03418	0.79	+1.1
3,585,177	+		CCNA_03418	0.86	-0.3
3,585,187	-		CCNA_03418	0.88	-0.0
3,585,213	+				+1.3
3,585,213	+				-1.6
3,585,213	+				-1.0
3,585,221	-				-0.6
3,585,221	-				+1.2
3,585,221	-				-0.8
3,585,294	+				-1.7
3,585,304	+				-1.0
3,585,305	+				-0.7
3,585,305	+				-0.8
3,585,305	+				+0.2
3,585,313	-				-1.6
3,585,313	-				-2.1
3,585,313	-				-0.3
3,585,328	+				-1.3
3,585,333	+				-1.8
3,585,387	+		CCNA_03419	0.10	+1.2
3,585,402	+		CCNA_03419	0.13	-1.0
3,585,410	-		CCNA_03419	0.15	-0.6
3,585,410	-		CCNA_03419	0.15	-0.3
3,585,419	+		CCNA_03419	0.17	-0.6
3,585,439	-		CCNA_03419	0.21	-0.5
3,585,462	-		CCNA_03419	0.25	-0.8
3,585,501	+		CCNA_03419	0.33	+0.4
3,585,501	+		CCNA_03419	0.33	-0.2
3,585,501	+		CCNA_03419	0.33	-0.7
3,585,533	-		CCNA_03419	0.39	-0.1
3,585,545	-		CCNA_03419	0.42	-1.6
3,585,551	-		CCNA_03419	0.43	-1.3
3,585,580	+		CCNA_03419	0.49	-0.0
3,585,587	+		CCNA_03419	0.50	+0.1
3,585,588	-		CCNA_03419	0.50	+0.4
3,585,600	+		CCNA_03419	0.53	+1.4
3,585,600	+		CCNA_03419	0.53	+0.3
3,585,608	-		CCNA_03419	0.54	-0.8
3,585,632	-		CCNA_03419	0.59	+0.1
3,585,641	+		CCNA_03419	0.61	-2.3
3,585,645	+		CCNA_03419	0.62	-0.6
3,585,647	-		CCNA_03419	0.62	-1.2
3,585,650	+		CCNA_03419	0.63	-1.0
3,585,650	+		CCNA_03419	0.63	-1.2
3,585,650	+		CCNA_03419	0.63	-0.2
3,585,650	+		CCNA_03419	0.63	-3.2
3,585,650	+		CCNA_03419	0.63	+1.6
3,585,658	-		CCNA_03419	0.64	-0.1
3,585,658	-		CCNA_03419	0.64	-1.6
3,585,658	-		CCNA_03419	0.64	-0.9
3,585,658	-		CCNA_03419	0.64	-1.2
3,585,691	+		CCNA_03419	0.71	-1.9
3,585,748	+		CCNA_03419	0.82	-0.1
3,585,761	-		CCNA_03419	0.85	+1.8