Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03254

Experiment: PYE with Vancomycin 0.007 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Vancomycin 0.007 mg/ml
3,424,133	-		CCNA_03253	0.33	+0.7
3,424,133	-		CCNA_03253	0.33	-2.6
3,424,133	-		CCNA_03253	0.33	-0.9
3,424,169	+		CCNA_03253	0.36	+0.2
3,424,177	+		CCNA_03253	0.36	-1.2
3,424,229	+		CCNA_03253	0.40	-0.7
3,424,239	+		CCNA_03253	0.41	-1.1
3,424,244	+		CCNA_03253	0.41	+1.6
3,424,244	+		CCNA_03253	0.41	+0.6
3,424,252	-		CCNA_03253	0.42	-0.1
3,424,252	-		CCNA_03253	0.42	-0.1
3,424,254	+		CCNA_03253	0.42	-1.0
3,424,254	+				+1.7
3,424,290	-		CCNA_03253	0.45	+0.5
3,424,290	-		CCNA_03253	0.45	-0.8
3,424,290	-		CCNA_03253	0.45	-0.0
3,424,292	+		CCNA_03253	0.45	+0.8
3,424,310	+		CCNA_03253	0.46	+0.3
3,424,311	+		CCNA_03253	0.46	+0.4
3,424,360	+		CCNA_03253	0.50	-1.1
3,424,365	+		CCNA_03253	0.50	+1.4
3,424,373	-		CCNA_03253	0.51	+0.8
3,424,373	-		CCNA_03253	0.51	+0.2
3,424,373	-		CCNA_03253	0.51	-0.6
3,424,373	-		CCNA_03253	0.51	-1.6
3,424,373	-		CCNA_03253	0.51	-1.7
3,424,373	-		CCNA_03253	0.51	+0.6
3,424,420	+		CCNA_03253	0.54	+0.1
3,424,435	+		CCNA_03253	0.55	+1.1
3,424,436	+		CCNA_03253	0.55	-0.4
3,424,436	+		CCNA_03253	0.55	-0.1
3,424,436	+		CCNA_03253	0.55	-0.0
3,424,441	+		CCNA_03253	0.56	-1.9
3,424,441	+		CCNA_03253	0.56	-0.4
3,424,444	-		CCNA_03253	0.56	+1.2
3,424,444	-		CCNA_03253	0.56	-1.3
3,424,444	-		CCNA_03253	0.56	-1.2
3,424,449	-		CCNA_03253	0.56	-0.3
3,424,449	-		CCNA_03253	0.56	-0.0
3,424,449	-		CCNA_03253	0.56	+0.1
3,424,449	-		CCNA_03253	0.56	+0.2
3,424,449	-		CCNA_03253	0.56	-1.7
3,424,473	+		CCNA_03253	0.58	-1.2
3,424,481	-		CCNA_03253	0.59	-2.2
3,424,485	+		CCNA_03253	0.59	-0.8
3,424,516	+		CCNA_03253	0.61	+1.8
3,424,516	+		CCNA_03253	0.61	-1.4
3,424,524	+		CCNA_03253	0.62	-0.5
3,424,632	-		CCNA_03253	0.70	+1.2
3,424,687	-		CCNA_03253	0.74	-1.2
3,424,728	-		CCNA_03253	0.77	-1.9
3,424,752	-		CCNA_03253	0.79	+0.8
3,424,787	-		CCNA_03253	0.81	-1.9
3,424,858	+		CCNA_03253	0.87	+0.1
3,424,881	+		CCNA_03253	0.88	-0.5
3,424,881	-		CCNA_03253	0.88	-0.0
3,424,889	-		CCNA_03253	0.89	-2.1
3,424,905	+				-0.2
3,424,913	-				-1.6
3,424,918	+				-0.8
3,424,929	+				-0.2
3,424,984	-				+1.2
3,424,984	-				+1.0
3,424,992	+				-0.2
3,424,996	-				-0.3
3,425,057	+				+0.2
3,425,080	+				+0.2
3,425,082	+				+2.2
3,425,096	-				+1.2
3,425,096	-				+0.9
3,425,171	+				+1.7
3,425,228	-				+1.2
3,425,244	+				-1.5
3,425,249	+				+1.2
3,425,249	+				-1.2
3,425,251	-				-0.9
3,425,252	-				+1.7
3,425,257	-				-1.2
3,425,272	+		CCNA_03254	0.10	-0.5
3,425,272	+		CCNA_03254	0.10	-0.7
3,425,272	+		CCNA_03254	0.10	-1.5
3,425,282	+		CCNA_03254	0.11	-0.8
3,425,287	+		CCNA_03254	0.12	-1.3
3,425,297	+		CCNA_03254	0.12	-2.3
3,425,331	+		CCNA_03254	0.15	+1.0
3,425,331	+		CCNA_03254	0.15	-2.0
3,425,331	+		CCNA_03254	0.15	+0.5
3,425,339	-		CCNA_03254	0.15	-0.5
3,425,354	+		CCNA_03254	0.16	+1.2
3,425,354	+		CCNA_03254	0.16	+0.1
3,425,361	-		CCNA_03254	0.17	+0.3
3,425,362	-		CCNA_03254	0.17	+0.1
3,425,378	+		CCNA_03254	0.18	-0.2
3,425,447	+		CCNA_03254	0.23	-1.6
3,425,455	-		CCNA_03254	0.24	-0.6
3,425,462	+		CCNA_03254	0.24	+2.3
3,425,529	+		CCNA_03254	0.29	-1.9
3,425,537	-		CCNA_03254	0.30	+0.4
3,425,544	-		CCNA_03254	0.30	-0.4
3,425,559	-				+1.7
3,425,587	-		CCNA_03254	0.34	-0.1
3,425,597	-		CCNA_03254	0.34	-1.4
3,425,650	+		CCNA_03254	0.38	-1.3
3,425,658	-		CCNA_03254	0.39	-0.9
3,425,718	+		CCNA_03254	0.43	-1.1
3,425,726	-		CCNA_03254	0.44	+1.3
3,425,726	-		CCNA_03254	0.44	-0.5
3,425,742	-		CCNA_03254	0.45	+0.7
3,425,758	+		CCNA_03254	0.46	-0.5
3,425,763	+		CCNA_03254	0.47	-1.5
3,425,763	+		CCNA_03254	0.47	+0.2
3,425,831	+		CCNA_03254	0.52	-0.8
3,425,831	+		CCNA_03254	0.52	+0.3
3,425,839	-		CCNA_03254	0.52	+0.1
3,425,839	-		CCNA_03254	0.52	-1.5
3,425,850	+		CCNA_03254	0.53	-1.0
3,425,901	+		CCNA_03254	0.57	+0.5
3,425,915	-		CCNA_03254	0.58	-0.8
3,425,936	-		CCNA_03254	0.59	+0.2
3,425,941	-		CCNA_03254	0.60	+0.2
3,425,947	+		CCNA_03254	0.60	-1.0
3,425,947	+		CCNA_03254	0.60	+0.9
3,425,947	+		CCNA_03254	0.60	-0.3
3,425,947	+		CCNA_03254	0.60	-0.1
3,425,947	+		CCNA_03254	0.60	+1.6
3,425,949	+		CCNA_03254	0.60	+0.8
3,425,955	-		CCNA_03254	0.61	-0.5
3,425,955	-		CCNA_03254	0.61	+0.8
3,425,955	-		CCNA_03254	0.61	-1.2
3,425,955	-		CCNA_03254	0.61	-2.3
3,425,955	-		CCNA_03254	0.61	+0.2
3,425,955	-		CCNA_03254	0.61	+1.4
3,425,955	-		CCNA_03254	0.61	-1.1
3,425,977	-		CCNA_03254	0.62	-1.6
3,426,013	-		CCNA_03254	0.65	-1.3
3,426,013	-		CCNA_03254	0.65	+1.0
3,426,013	-		CCNA_03254	0.65	-1.5
3,426,027	+		CCNA_03254	0.66	-0.8
3,426,027	+		CCNA_03254	0.66	-0.9
3,426,033	+		CCNA_03254	0.67	-0.3
3,426,035	-		CCNA_03254	0.67	+1.0
3,426,062	+		CCNA_03254	0.69	-0.8
3,426,062	+		CCNA_03254	0.69	-1.6
3,426,074	-		CCNA_03254	0.70	-0.3
3,426,096	-		CCNA_03254	0.71	-1.2
3,426,124	+		CCNA_03254	0.73	-1.3
3,426,127	-		CCNA_03254	0.73	-0.3
3,426,146	-		CCNA_03254	0.75	+0.3
3,426,172	+		CCNA_03254	0.77	-1.5
3,426,178	+		CCNA_03254	0.77	-0.8
3,426,186	-		CCNA_03254	0.78	+0.8
3,426,190	+		CCNA_03254	0.78	+0.4
3,426,239	+		CCNA_03254	0.82	-2.2
3,426,250	+		CCNA_03254	0.83	-2.1
3,426,251	+		CCNA_03254	0.83	+0.4
3,426,262	+		CCNA_03254	0.83	-0.3
3,426,262	+		CCNA_03254	0.83	+0.0
3,426,262	+		CCNA_03254	0.83	+4.0
3,426,265	-		CCNA_03254	0.84	+1.2
3,426,270	-		CCNA_03254	0.84	-0.5
3,426,290	-		CCNA_03254	0.85	-0.4
3,426,303	-		CCNA_03254	0.86	-0.3
3,426,305	+		CCNA_03254	0.87	-0.5
3,426,305	+		CCNA_03254	0.87	+1.0
3,426,313	-		CCNA_03254	0.87	-1.2
3,426,313	-		CCNA_03254	0.87	+1.2
3,426,313	-		CCNA_03254	0.87	-0.3
3,426,365	+				-1.4
3,426,391	-				-1.5
3,426,417	+				-1.4
3,426,433	+				-1.4
3,426,441	-				+1.0
3,426,441	-				-0.2
3,426,443	+				-0.2
3,426,443	+				+0.3
3,426,443	+				+0.7
3,426,451	-				+0.5
3,426,451	-				-1.2
3,426,475	+				-1.4
3,426,483	-				-0.3
3,426,510	-				-0.0
3,426,576	+				+0.8
3,426,584	-				+0.6
3,426,584	-				-0.2
3,426,641	-				-1.5
3,426,648	-				-0.6
3,426,654	+		CCNA_03255	0.11	+0.4
3,426,659	+		CCNA_03255	0.12	-2.7
3,426,678	-		CCNA_03255	0.16	-1.5
3,426,727	+		CCNA_03255	0.27	-2.2
3,426,727	+		CCNA_03255	0.27	+2.0
3,426,727	+		CCNA_03255	0.27	+1.3
3,426,735	-		CCNA_03255	0.29	-1.4
3,426,735	-		CCNA_03255	0.29	-0.3
3,426,779	+		CCNA_03255	0.38	-0.9
3,426,779	+		CCNA_03255	0.38	-0.8
3,426,779	+		CCNA_03255	0.38	-0.2
3,426,787	-		CCNA_03255	0.40	-0.4
3,426,787	-		CCNA_03255	0.40	+0.1
3,426,787	-		CCNA_03255	0.40	+0.0
3,426,787	-		CCNA_03255	0.40	-1.9
3,426,787	-		CCNA_03255	0.40	-0.0
3,426,853	+		CCNA_03255	0.55	-0.7
3,426,861	-		CCNA_03255	0.57	-0.2
3,426,862	-		CCNA_03255	0.57	+1.8
3,426,881	-		CCNA_03255	0.61	-0.2
3,426,881	-		CCNA_03255	0.61	-0.7
3,426,881	-		CCNA_03255	0.61	-0.5
3,426,908	-		CCNA_03255	0.67	+1.9
3,426,934	-		CCNA_03255	0.73	+0.4
3,427,004	+		CCNA_03255	0.89	+0.6
3,427,022	+				+0.8
3,427,022	+				+0.3
3,427,022	+				-0.9
3,427,022	+				+1.2
3,427,030	-				-0.3
3,427,030	-				-2.9
3,427,068	-				-0.4
3,427,153	-				+0.1
3,427,451	-		CCNA_03256	0.25	-0.3