Experiment: PYE with Vancomycin 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02070 and CCNA_02071 are separated by 157 nucleotides CCNA_02071 and CCNA_02072 are separated by 120 nucleotides
CCNA_02070: CCNA_02070 - protein translocase subunit secD, at 2,220,831 to 2,222,429
_02070
CCNA_02071: CCNA_02071 - protein translocase subunit YajC, at 2,222,587 to 2,222,898
_02071
CCNA_02072: CCNA_02072 - ATP-dependent protease subunit, at 2,223,019 to 2,223,858
_02072
Position (kb)
2222
2223 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2222.650 kb on - strand, within CCNA_02071 at 2223.011 kb on - strand at 2223.024 kb on - strand at 2223.061 kb on + strand at 2223.062 kb on + strand at 2223.103 kb on - strand, within CCNA_02072 at 2223.180 kb on + strand, within CCNA_02072 at 2223.270 kb on + strand, within CCNA_02072 at 2223.270 kb on + strand, within CCNA_02072 at 2223.278 kb on - strand, within CCNA_02072 at 2223.278 kb on - strand, within CCNA_02072 at 2223.278 kb on - strand, within CCNA_02072 at 2223.278 kb on - strand, within CCNA_02072 at 2223.278 kb on - strand, within CCNA_02072 at 2223.292 kb on + strand, within CCNA_02072 at 2223.299 kb on - strand, within CCNA_02072 at 2223.306 kb on + strand, within CCNA_02072 at 2223.338 kb on - strand, within CCNA_02072 at 2223.341 kb on + strand, within CCNA_02072 at 2223.344 kb on - strand, within CCNA_02072 at 2223.463 kb on - strand, within CCNA_02072 at 2223.485 kb on - strand, within CCNA_02072 at 2223.520 kb on - strand, within CCNA_02072 at 2223.545 kb on - strand, within CCNA_02072 at 2223.625 kb on + strand, within CCNA_02072 at 2223.647 kb on + strand, within CCNA_02072 at 2223.673 kb on - strand, within CCNA_02072 at 2223.727 kb on + strand, within CCNA_02072 at 2223.757 kb on + strand, within CCNA_02072 at 2223.765 kb on - strand, within CCNA_02072 at 2223.766 kb on - strand, within CCNA_02072 at 2223.802 kb on + strand at 2223.802 kb on + strand at 2223.839 kb on + strand at 2223.842 kb on - strand at 2223.858 kb on + strand at 2223.867 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Vancomycin 0.007 mg/ml remove 2,222,650 - CCNA_02071 0.20 -2.8 2,223,011 - -1.7 2,223,024 - -0.1 2,223,061 + -0.8 2,223,062 + -2.0 2,223,103 - CCNA_02072 0.10 +0.7 2,223,180 + CCNA_02072 0.19 +0.2 2,223,270 + CCNA_02072 0.30 -0.4 2,223,270 + CCNA_02072 0.30 -0.7 2,223,278 - CCNA_02072 0.31 -0.5 2,223,278 - CCNA_02072 0.31 -0.7 2,223,278 - CCNA_02072 0.31 +0.7 2,223,278 - CCNA_02072 0.31 -0.0 2,223,278 - CCNA_02072 0.31 -0.5 2,223,292 + CCNA_02072 0.33 -1.5 2,223,299 - CCNA_02072 0.33 +1.5 2,223,306 + CCNA_02072 0.34 -0.3 2,223,338 - CCNA_02072 0.38 -0.8 2,223,341 + CCNA_02072 0.38 +1.9 2,223,344 - CCNA_02072 0.39 +0.3 2,223,463 - CCNA_02072 0.53 +1.7 2,223,485 - CCNA_02072 0.55 +0.1 2,223,520 - CCNA_02072 0.60 -0.8 2,223,545 - CCNA_02072 0.63 +0.7 2,223,625 + CCNA_02072 0.72 +1.8 2,223,647 + CCNA_02072 0.75 -0.9 2,223,673 - CCNA_02072 0.78 -0.0 2,223,727 + CCNA_02072 0.84 -0.9 2,223,757 + CCNA_02072 0.88 +0.6 2,223,765 - CCNA_02072 0.89 +0.2 2,223,766 - CCNA_02072 0.89 +0.6 2,223,802 + +2.0 2,223,802 + +0.0 2,223,839 + -1.0 2,223,842 - +0.1 2,223,858 + +0.1 2,223,867 - -1.0
Or see this region's nucleotide sequence