Experiment: PYE with Vancomycin 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01626 and CCNA_01627 overlap by 4 nucleotides CCNA_01627 and CCNA_01628 are separated by 11 nucleotides CCNA_01628 and CCNA_01629 are separated by 123 nucleotides CCNA_01629 and CCNA_01630 are separated by 21 nucleotides
CCNA_01626: CCNA_01626 - pyridoxal phosphate biosynthetic protein pdxJ, at 1,747,568 to 1,748,332
_01626
CCNA_01627: CCNA_01627 - Holo-(acyl-carrier protein) synthase, at 1,748,329 to 1,748,730
_01627
CCNA_01628: CCNA_01628 - hypothetical protein, at 1,748,742 to 1,749,035
_01628
CCNA_01629: CCNA_01629 - signal peptidase I, at 1,749,159 to 1,750,004
_01629
CCNA_01630: CCNA_01630 - ribonuclease III, at 1,750,026 to 1,750,721
_01630
Position (kb) 1748
1749
1750 Strain fitness (log2 ratio) -1
0
1
2
3 at 1748.308 kb on + strand at 1748.321 kb on - strand at 1748.326 kb on + strand at 1748.706 kb on + strand at 1748.745 kb on + strand at 1748.757 kb on - strand at 1748.764 kb on + strand at 1748.806 kb on + strand, within CCNA_01628 at 1748.817 kb on - strand, within CCNA_01628 at 1748.909 kb on - strand, within CCNA_01628 at 1749.042 kb on + strand at 1749.042 kb on + strand at 1749.062 kb on + strand at 1749.062 kb on + strand at 1749.077 kb on + strand at 1749.077 kb on + strand at 1749.085 kb on - strand at 1749.085 kb on - strand at 1749.085 kb on - strand at 1749.091 kb on + strand at 1749.146 kb on + strand at 1749.178 kb on + strand at 1749.186 kb on - strand at 1749.251 kb on + strand, within CCNA_01629 at 1749.253 kb on + strand, within CCNA_01629 at 1749.259 kb on + strand, within CCNA_01629 at 1749.364 kb on - strand, within CCNA_01629 at 1749.366 kb on + strand, within CCNA_01629 at 1749.372 kb on + strand, within CCNA_01629 at 1749.388 kb on + strand, within CCNA_01629 at 1749.543 kb on + strand, within CCNA_01629 at 1749.551 kb on - strand, within CCNA_01629 at 1749.582 kb on + strand, within CCNA_01629 at 1749.591 kb on + strand, within CCNA_01629 at 1749.624 kb on + strand, within CCNA_01629 at 1749.636 kb on + strand, within CCNA_01629 at 1749.710 kb on + strand, within CCNA_01629 at 1749.710 kb on + strand, within CCNA_01629 at 1749.712 kb on + strand, within CCNA_01629 at 1749.720 kb on + strand, within CCNA_01629 at 1749.747 kb on + strand, within CCNA_01629 at 1749.913 kb on - strand, within CCNA_01629 at 1750.014 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Vancomycin 0.007 mg/ml remove 1,748,308 + +0.7 1,748,321 - -0.1 1,748,326 + +0.8 1,748,706 + -0.1 1,748,745 + -0.1 1,748,757 - -0.0 1,748,764 + +0.8 1,748,806 + CCNA_01628 0.22 +0.1 1,748,817 - CCNA_01628 0.26 -0.6 1,748,909 - CCNA_01628 0.57 +0.2 1,749,042 + +0.9 1,749,042 + +1.2 1,749,062 + -1.3 1,749,062 + +0.7 1,749,077 + -1.5 1,749,077 + +0.8 1,749,085 - +0.7 1,749,085 - +0.1 1,749,085 - -0.3 1,749,091 + -1.0 1,749,146 + +1.1 1,749,178 + +2.9 1,749,186 - +0.8 1,749,251 + CCNA_01629 0.11 +1.9 1,749,253 + CCNA_01629 0.11 +1.0 1,749,259 + CCNA_01629 0.12 +0.4 1,749,364 - CCNA_01629 0.24 +1.2 1,749,366 + CCNA_01629 0.24 +1.4 1,749,372 + CCNA_01629 0.25 +2.8 1,749,388 + CCNA_01629 0.27 +0.6 1,749,543 + CCNA_01629 0.45 +0.8 1,749,551 - CCNA_01629 0.46 +0.4 1,749,582 + CCNA_01629 0.50 +0.5 1,749,591 + CCNA_01629 0.51 +1.9 1,749,624 + CCNA_01629 0.55 +1.6 1,749,636 + CCNA_01629 0.56 +1.7 1,749,710 + CCNA_01629 0.65 +0.5 1,749,710 + CCNA_01629 0.65 +0.9 1,749,712 + CCNA_01629 0.65 +0.8 1,749,720 + CCNA_01629 0.66 +1.3 1,749,747 + CCNA_01629 0.70 +1.3 1,749,913 - CCNA_01629 0.89 +1.1 1,750,014 + -0.4
Or see this region's nucleotide sequence