Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01606

Experiment: PYE with Vancomycin 0.007 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Vancomycin 0.007 mg/ml
1,724,910	+		CCNA_01604	0.25	-0.6
1,724,935	-		CCNA_01604	0.29	+0.9
1,724,943	+		CCNA_01604	0.31	+2.3
1,724,974	-		CCNA_01604	0.36	+3.3
1,725,017	+		CCNA_01604	0.43	-1.0
1,725,017	+		CCNA_01604	0.43	+0.7
1,725,035	+		CCNA_01604	0.46	-2.1
1,725,035	+		CCNA_01604	0.46	+0.4
1,725,041	+		CCNA_01604	0.47	-2.4
1,725,062	+		CCNA_01604	0.51	+0.4
1,725,074	+		CCNA_01604	0.53	+0.3
1,725,098	+		CCNA_01604	0.57	-0.3
1,725,098	+		CCNA_01604	0.57	-0.0
1,725,112	+		CCNA_01604	0.59	+0.9
1,725,143	+		CCNA_01604	0.64	-1.5
1,725,151	-		CCNA_01604	0.66	-1.1
1,725,154	+		CCNA_01604	0.66	+0.3
1,725,170	+		CCNA_01604	0.69	-1.4
1,725,170	+		CCNA_01604	0.69	-1.1
1,725,170	+		CCNA_01604	0.69	-0.9
1,725,170	+		CCNA_01604	0.69	-0.7
1,725,178	-		CCNA_01604	0.70	+1.3
1,725,186	+		CCNA_01604	0.72	-0.6
1,725,194	+		CCNA_01604	0.73	-1.5
1,725,194	+		CCNA_01604	0.73	+0.5
1,725,194	+		CCNA_01604	0.73	+0.1
1,725,194	+		CCNA_01604	0.73	+0.0
1,725,194	+		CCNA_01604	0.73	+0.4
1,725,204	+		CCNA_01604	0.75	-2.4
1,725,253	+		CCNA_01604	0.83	+0.4
1,725,282	+		CCNA_01604	0.88	+0.3
1,725,282	+		CCNA_01604	0.88	-2.5
1,725,283	-		CCNA_01604	0.88	-1.0
1,725,303	+				+0.3
1,725,310	+				+1.3
1,725,319	-				+0.8
1,725,320	+				-1.0
1,725,411	-		CCNA_01605	0.11	+1.1
1,725,411	-		CCNA_01605	0.11	-1.0
1,725,452	+		CCNA_01605	0.19	+2.3
1,725,487	+		CCNA_01605	0.25	+0.2
1,725,487	+		CCNA_01605	0.25	+0.1
1,725,489	-		CCNA_01605	0.26	+0.8
1,725,495	-		CCNA_01605	0.27	-2.0
1,725,495	-		CCNA_01605	0.27	-0.3
1,725,495	-		CCNA_01605	0.27	-2.6
1,725,516	-		CCNA_01605	0.31	-1.5
1,725,516	-		CCNA_01605	0.31	+0.7
1,725,518	+		CCNA_01605	0.31	-0.1
1,725,540	+		CCNA_01605	0.35	-0.7
1,725,548	-		CCNA_01605	0.37	+0.1
1,725,548	-		CCNA_01605	0.37	-0.7
1,725,550	+		CCNA_01605	0.37	+0.9
1,725,558	-		CCNA_01605	0.39	-1.5
1,725,558	-		CCNA_01605	0.39	-2.4
1,725,570	+		CCNA_01605	0.41	+0.1
1,725,654	+		CCNA_01605	0.56	+1.1
1,725,654	+		CCNA_01605	0.56	+0.6
1,725,656	+		CCNA_01605	0.57	-0.4
1,725,662	-		CCNA_01605	0.58	-0.7
1,725,662	-		CCNA_01605	0.58	+0.4
1,725,664	-		CCNA_01605	0.58	+1.0
1,725,664	-		CCNA_01605	0.58	-0.1
1,725,664	-		CCNA_01605	0.58	-0.7
1,725,664	-		CCNA_01605	0.58	-1.3
1,725,664	-		CCNA_01605	0.58	+0.6
1,725,715	-		CCNA_01605	0.68	-1.2
1,725,743	-		CCNA_01605	0.73	+0.9
1,725,761	-		CCNA_01605	0.76	-1.6
1,725,833	-		CCNA_01605	0.89	-0.4
1,725,835	-		CCNA_01605	0.90	+0.4
1,725,840	+				-0.9
1,725,848	-				-0.6
1,725,848	-				-0.7
1,725,848	-				+0.7
1,725,855	+				+0.7
1,725,863	-				-0.7
1,725,931	-				+1.1
1,725,938	-				-0.7
1,726,016	+		CCNA_01606	0.17	+0.7
1,726,066	-		CCNA_01606	0.25	+0.7
1,726,089	+		CCNA_01606	0.29	-0.1
1,726,096	+		CCNA_01606	0.30	+0.3
1,726,107	+		CCNA_01606	0.31	-0.9
1,726,165	+		CCNA_01606	0.40	+0.2
1,726,168	+		CCNA_01606	0.40	+0.2
1,726,172	-		CCNA_01606	0.41	-1.1
1,726,181	-		CCNA_01606	0.42	-1.5
1,726,254	+		CCNA_01606	0.53	+0.0
1,726,262	-		CCNA_01606	0.55	-0.4
1,726,262	-		CCNA_01606	0.55	+0.0
1,726,264	+		CCNA_01606	0.55	+0.3
1,726,272	-		CCNA_01606	0.56	-0.5
1,726,275	+		CCNA_01606	0.57	-1.2
1,726,345	+		CCNA_01606	0.67	-0.1
1,726,357	+		CCNA_01606	0.69	+1.1
1,726,357	+		CCNA_01606	0.69	+2.3
1,726,391	+		CCNA_01606	0.74	-0.3
1,726,392	+		CCNA_01606	0.74	+0.7
1,726,450	+		CCNA_01606	0.83	+0.7
1,726,450	+		CCNA_01606	0.83	-0.7
1,726,563	-				+3.9
1,726,581	+				-0.2
1,726,581	+				+0.2
1,726,581	+				-0.7
1,726,581	+				+1.3
1,726,581	+				+1.7
1,726,624	+				-1.8
1,726,643	+				+1.3
1,726,643	+				-1.3
1,726,680	+				-1.0
1,726,680	+				-0.4
1,726,866	-		CCNA_01607	0.12	+0.8
1,726,866	-		CCNA_01607	0.12	+0.3
1,727,011	+		CCNA_01607	0.32	+1.7
1,727,455	+				-0.3
1,727,489	+				-0.3
1,727,494	+				+1.0
1,727,502	-				+0.1
1,727,512	+				+1.1
1,727,515	-				-0.3
1,727,546	+		CCNA_01608	0.12	-2.0
1,727,554	-		CCNA_01608	0.13	-0.0