Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01569

Experiment: PYE with Vancomycin 0.007 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Vancomycin 0.007 mg/ml
1,685,322	+		CCNA_01568	0.38	-1.8
1,685,322	+		CCNA_01568	0.38	+0.1
1,685,322	+		CCNA_01568	0.38	+0.2
1,685,322	+		CCNA_01568	0.38	+0.7
1,685,322	+		CCNA_01568	0.38	-1.1
1,685,330	-		CCNA_01568	0.38	-0.1
1,685,330	-		CCNA_01568	0.38	-0.1
1,685,330	-		CCNA_01568	0.38	-1.5
1,685,339	-		CCNA_01568	0.39	-0.6
1,685,344	-		CCNA_01568	0.39	+1.9
1,685,391	+		CCNA_01568	0.43	-0.1
1,685,415	+		CCNA_01568	0.45	+0.2
1,685,419	-				+1.7
1,685,446	+		CCNA_01568	0.47	-0.3
1,685,448	+				+2.7
1,685,448	+		CCNA_01568	0.47	-1.8
1,685,454	-		CCNA_01568	0.47	+0.2
1,685,454	-		CCNA_01568	0.47	+1.7
1,685,456	-		CCNA_01568	0.48	+0.6
1,685,456	-		CCNA_01568	0.48	+1.5
1,685,456	-		CCNA_01568	0.48	-0.5
1,685,557	+		CCNA_01568	0.55	+1.0
1,685,583	-		CCNA_01568	0.57	-0.6
1,685,583	-		CCNA_01568	0.57	-1.6
1,685,583	-		CCNA_01568	0.57	-1.0
1,685,602	+		CCNA_01568	0.58	+0.2
1,685,619	+		CCNA_01568	0.59	-1.0
1,685,621	+		CCNA_01568	0.60	+0.0
1,685,621	+		CCNA_01568	0.60	+0.4
1,685,629	-		CCNA_01568	0.60	+1.4
1,685,629	-		CCNA_01568	0.60	+0.3
1,685,648	-		CCNA_01568	0.62	-0.3
1,685,689	+		CCNA_01568	0.65	+0.6
1,685,718	-		CCNA_01568	0.67	+0.1
1,685,771	+		CCNA_01568	0.71	-0.1
1,685,778	-		CCNA_01568	0.71	-0.1
1,685,809	+		CCNA_01568	0.73	-1.2
1,685,877	-		CCNA_01568	0.78	-1.0
1,685,879	+		CCNA_01568	0.79	-2.3
1,685,879	+		CCNA_01568	0.79	+0.1
1,685,879	+		CCNA_01568	0.79	-1.1
1,685,879	+		CCNA_01568	0.79	+0.6
1,685,882	-		CCNA_01568	0.79	-0.4
1,685,887	-		CCNA_01568	0.79	-1.6
1,685,887	-		CCNA_01568	0.79	+0.2
1,685,887	-		CCNA_01568	0.79	-0.6
1,685,947	+				+4.3
1,686,015	+		CCNA_01568	0.88	-0.6
1,686,032	+		CCNA_01568	0.90	-0.5
1,686,032	+		CCNA_01568	0.90	-0.5
1,686,165	+				-0.4
1,686,178	+				+0.1
1,686,244	-				+0.3
1,686,244	-				-2.1
1,686,293	+				+0.6
1,686,293	+				-0.9
1,686,298	+				-1.3
1,686,328	+				+1.2
1,686,333	+				+0.4
1,686,336	-				-1.7
1,686,369	+		CCNA_01569	0.12	-0.1
1,686,411	-		CCNA_01569	0.18	-0.9
1,686,425	+		CCNA_01569	0.20	-0.7
1,686,425	+		CCNA_01569	0.20	-1.7
1,686,444	+		CCNA_01569	0.22	-0.9
1,686,452	-		CCNA_01569	0.23	-0.9
1,686,457	+		CCNA_01569	0.24	+0.8
1,686,457	+		CCNA_01569	0.24	+0.5
1,686,459	-		CCNA_01569	0.24	-2.0
1,686,465	-		CCNA_01569	0.25	-0.1
1,686,465	-		CCNA_01569	0.25	+0.6
1,686,470	+		CCNA_01569	0.26	-0.3
1,686,478	-		CCNA_01569	0.27	-1.1
1,686,479	+		CCNA_01569	0.27	+0.7
1,686,527	-		CCNA_01569	0.34	+0.4
1,686,529	+		CCNA_01569	0.34	-0.2
1,686,648	-		CCNA_01569	0.50	-0.6
1,686,648	-		CCNA_01569	0.50	-0.6
1,686,674	+		CCNA_01569	0.54	-1.4
1,686,674	+		CCNA_01569	0.54	-2.0
1,686,674	+		CCNA_01569	0.54	-0.7
1,686,718	+				+2.3
1,686,726	-		CCNA_01569	0.61	-0.7
1,686,752	-		CCNA_01569	0.65	-0.2
1,686,829	-		CCNA_01569	0.76	+1.1
1,686,868	-		CCNA_01569	0.81	-1.0
1,686,897	-		CCNA_01569	0.85	+0.5
1,686,928	-		CCNA_01569	0.89	-0.5
1,687,021	+				-1.0
1,687,029	-				-0.8
1,687,066	+				-0.1
1,687,066	+				+1.5
1,687,074	-				-0.1
1,687,074	-				+0.5
1,687,074	-				-1.5
1,687,109	+				-0.4
1,687,109	+				+0.6
1,687,112	-				+1.3
1,687,166	-				-1.2
1,687,179	-				+0.9
1,687,298	-		CCNA_01570	0.14	-0.8
1,687,336	-		CCNA_01570	0.16	-0.1
1,687,363	-		CCNA_01570	0.18	+1.9
1,687,369	-		CCNA_01570	0.18	+1.3
1,687,374	-		CCNA_01570	0.19	+0.6
1,687,374	-		CCNA_01570	0.19	+1.3
1,687,403	+		CCNA_01570	0.21	+0.6
1,687,427	+		CCNA_01570	0.22	+1.1
1,687,427	+		CCNA_01570	0.22	+0.2
1,687,461	+		CCNA_01570	0.24	-0.8
1,687,501	-		CCNA_01570	0.27	-1.3
1,687,514	+		CCNA_01570	0.28	+1.5
1,687,522	-		CCNA_01570	0.28	-0.3
1,687,522	-		CCNA_01570	0.28	-1.3
1,687,540	+		CCNA_01570	0.29	-1.0
1,687,556	+		CCNA_01570	0.30	-0.4
1,687,588	+		CCNA_01570	0.32	+0.9
1,687,599	+		CCNA_01570	0.33	-1.6
1,687,604	-		CCNA_01570	0.33	-0.9
1,687,639	+		CCNA_01570	0.36	-0.3
1,687,650	+		CCNA_01570	0.36	+0.5
1,687,667	+		CCNA_01570	0.37	-1.7
1,687,698	+		CCNA_01570	0.39	+1.4
1,687,713	+		CCNA_01570	0.40	+0.0
1,687,759	+		CCNA_01570	0.43	-2.1
1,687,801	-		CCNA_01570	0.46	+0.6
1,687,841	-		CCNA_01570	0.49	-0.3
1,687,846	+		CCNA_01570	0.49	+0.0
1,687,862	-		CCNA_01570	0.50	+1.2
1,687,879	+		CCNA_01570	0.51	+0.8
1,687,879	+		CCNA_01570	0.51	+1.3
1,687,887	-		CCNA_01570	0.52	-0.6
1,687,887	-		CCNA_01570	0.52	+1.1
1,687,887	-		CCNA_01570	0.52	-0.9
1,687,974	+		CCNA_01570	0.57	+0.4
1,687,994	-		CCNA_01570	0.58	+0.8