Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01503

Experiment: PYE with Vancomycin 0.007 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Vancomycin 0.007 mg/ml
1,611,272	+		CCNA_01500	0.44	-0.9
1,611,280	-		CCNA_01500	0.44	-1.5
1,611,285	-		CCNA_01500	0.45	-0.2
1,611,300	+		CCNA_01500	0.46	+0.3
1,611,300	+		CCNA_01500	0.46	-1.0
1,611,300	+		CCNA_01500	0.46	-2.1
1,611,305	+		CCNA_01500	0.46	+0.6
1,611,357	+		CCNA_01500	0.51	+0.8
1,611,365	-		CCNA_01500	0.52	+1.0
1,611,366	-		CCNA_01500	0.52	+1.8
1,611,418	+		CCNA_01500	0.56	-0.4
1,611,450	+		CCNA_01500	0.59	-0.7
1,611,469	-		CCNA_01500	0.61	-0.2
1,611,527	-		CCNA_01500	0.66	+1.1
1,611,527	-		CCNA_01500	0.66	-0.5
1,611,537	-		CCNA_01500	0.67	-1.0
1,611,624	+		CCNA_01500	0.74	-1.3
1,611,627	-		CCNA_01500	0.74	-0.0
1,611,674	+		CCNA_01500	0.78	-1.7
1,611,675	+		CCNA_01500	0.79	-0.6
1,611,682	-		CCNA_01500	0.79	+1.1
1,611,682	-		CCNA_01500	0.79	+0.3
1,611,682	-		CCNA_01500	0.79	-0.2
1,611,682	-		CCNA_01500	0.79	+1.2
1,611,718	-		CCNA_01500	0.82	-1.3
1,611,771	-		CCNA_01500	0.87	+0.5
1,611,810	-				+0.8
1,611,816	+				+1.4
1,611,816	+				-1.0
1,611,821	+				-0.8
1,611,826	+				+1.2
1,611,876	-				-0.4
1,611,908	+				+0.8
1,611,908	+				+0.6
1,611,911	-				+0.4
1,611,916	-				+0.1
1,611,940	+		CCNA_01501	0.14	-1.7
1,611,940	+		CCNA_01501	0.14	+1.2
1,611,987	-		CCNA_01501	0.26	+0.2
1,611,989	-		CCNA_01501	0.27	-1.9
1,612,002	-		CCNA_01501	0.30	-1.3
1,612,042	-		CCNA_01501	0.41	+0.4
1,612,058	-		CCNA_01501	0.45	+0.3
1,612,172	+		CCNA_01501	0.75	-1.4
1,612,178	+		CCNA_01501	0.76	-0.7
1,612,369	+				-1.7
1,612,374	-		CCNA_01503	0.10	+0.1
1,612,374	-		CCNA_01503	0.10	-0.2
1,612,435	+		CCNA_01503	0.16	-1.4
1,612,443	-		CCNA_01503	0.17	-0.6
1,612,470	+		CCNA_01503	0.19	+0.6
1,612,475	+		CCNA_01503	0.19	+0.9
1,612,478	-		CCNA_01503	0.20	-0.5
1,612,499	+		CCNA_01503	0.22	+1.4
1,612,507	-		CCNA_01503	0.22	+0.8
1,612,573	+		CCNA_01503	0.29	-0.5
1,612,586	-		CCNA_01503	0.30	-1.7
1,612,593	-		CCNA_01503	0.30	-0.9
1,612,618	+		CCNA_01503	0.33	+0.8
1,612,618	+		CCNA_01503	0.33	-0.5
1,612,828	-		CCNA_01503	0.52	-0.4
1,612,839	-		CCNA_01503	0.53	-0.6
1,612,867	-		CCNA_01503	0.56	+0.6
1,612,876	+		CCNA_01503	0.57	-0.5
1,612,912	+		CCNA_01503	0.60	-0.4
1,612,914	-		CCNA_01503	0.60	-0.6
1,612,919	+		CCNA_01503	0.60	+0.8
1,612,945	-		CCNA_01503	0.63	-0.9
1,612,957	-		CCNA_01503	0.64	-1.4
1,613,020	+		CCNA_01503	0.70	+0.3
1,613,020	+		CCNA_01503	0.70	-0.4
1,613,020	+		CCNA_01503	0.70	+0.1
1,613,028	-		CCNA_01503	0.71	-0.2
1,613,092	+		CCNA_01503	0.76	+1.2
1,613,092	+		CCNA_01503	0.76	+0.5
1,613,115	+		CCNA_01503	0.79	-0.0
1,613,115	+		CCNA_01503	0.79	+0.3
1,613,208	+		CCNA_01503	0.87	+0.1
1,613,208	+		CCNA_01503	0.87	+2.2
1,613,208	+		CCNA_01503	0.87	+0.1
1,613,208	+		CCNA_01503	0.87	+0.2
1,613,208	+		CCNA_01503	0.87	-1.6
1,613,216	-		CCNA_01503	0.88	+0.7
1,613,216	-		CCNA_01503	0.88	-1.3
1,613,216	-		CCNA_01503	0.88	-0.5
1,613,216	-		CCNA_01503	0.88	-2.0
1,613,216	-		CCNA_01503	0.88	-0.6
1,613,216	-		CCNA_01503	0.88	-0.1
1,613,216	-		CCNA_01503	0.88	-0.9
1,613,240	-				+0.1
1,613,262	-				+1.3
1,613,307	+				-0.5
1,613,310	-				-1.7
1,613,326	+				-0.7
1,613,326	+				+0.1
1,613,326	+				+0.3
1,613,334	-				-0.9
1,613,357	-				-0.1
1,613,408	+				+0.1
1,613,408	+				+0.0
1,613,448	-		CCNA_01502	0.11	+0.6
1,613,543	+		CCNA_01502	0.21	-0.5
1,613,592	+		CCNA_01502	0.26	-0.2
1,613,669	-		CCNA_01502	0.34	+1.2
1,613,689	-		CCNA_01502	0.36	-0.6
1,613,691	+		CCNA_01502	0.37	+0.3
1,613,781	+		CCNA_01502	0.46	+0.1
1,613,781	+		CCNA_01502	0.46	-1.0
1,613,786	+		CCNA_01502	0.47	-0.9
1,613,787	+		CCNA_01502	0.47	-2.7
1,613,792	+		CCNA_01502	0.47	-0.2
1,613,799	-		CCNA_01502	0.48	-0.4
1,613,801	+		CCNA_01502	0.48	+0.1
1,613,801	+		CCNA_01502	0.48	+0.3
1,613,837	+		CCNA_01502	0.52	+2.5
1,613,837	+		CCNA_01502	0.52	-0.0
1,613,845	-		CCNA_01502	0.53	-0.3
1,613,845	-		CCNA_01502	0.53	+2.2
1,613,845	-		CCNA_01502	0.53	-0.0
1,613,857	+		CCNA_01502	0.54	-0.0
1,613,864	+		CCNA_01502	0.55	-0.8
1,613,865	+		CCNA_01502	0.55	+1.2
1,613,870	+		CCNA_01502	0.56	+1.9
1,613,870	+		CCNA_01502	0.56	-1.2
1,613,873	-		CCNA_01502	0.56	-0.1
1,613,875	+		CCNA_01502	0.56	+0.1
1,613,888	-		CCNA_01502	0.57	+1.6
1,613,948	+		CCNA_01502	0.64	+1.6
1,613,951	-		CCNA_01502	0.64	-0.4
1,613,953	+		CCNA_01502	0.64	-1.5
1,613,988	+		CCNA_01502	0.68	-0.5
1,613,998	+		CCNA_01502	0.69	+0.5
1,613,998	+		CCNA_01502	0.69	-1.5
1,613,998	+		CCNA_01502	0.69	-1.1
1,613,998	+		CCNA_01502	0.69	+0.5
1,613,998	+		CCNA_01502	0.69	+0.2
1,614,006	-		CCNA_01502	0.70	+1.1
1,614,006	-		CCNA_01502	0.70	-2.3
1,614,006	-		CCNA_01502	0.70	-1.1
1,614,018	+		CCNA_01502	0.71	-0.8
1,614,055	+		CCNA_01502	0.75	+0.6
1,614,055	+		CCNA_01502	0.75	+0.7
1,614,063	-		CCNA_01502	0.76	-0.7
1,614,095	-		CCNA_01502	0.79	-1.5
1,614,095	-		CCNA_01502	0.79	-0.7
1,614,105	-		CCNA_01502	0.80	-0.6
1,614,118	+		CCNA_01502	0.82	-0.4
1,614,168	-		CCNA_01502	0.87	-2.6
1,614,172	+		CCNA_01502	0.88	+0.6
1,614,241	-				-0.4
1,614,242	+				-1.1
1,614,261	-				-0.5
1,614,288	+				+0.2
1,614,291	-				+1.0
1,614,296	-				-0.2
1,614,296	-				+1.6
1,614,305	+				+1.0
1,614,310	+				+0.1