Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01501

Experiment: PYE with Vancomycin 0.007 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Vancomycin 0.007 mg/ml
1,610,907	+		CCNA_01500	0.12	-0.6
1,610,942	+		CCNA_01500	0.15	-0.2
1,610,942	+		CCNA_01500	0.15	+0.5
1,610,947	+		CCNA_01500	0.15	-0.7
1,610,949	+		CCNA_01500	0.16	-0.5
1,610,950	-		CCNA_01500	0.16	+0.4
1,610,950	-		CCNA_01500	0.16	+0.8
1,610,955	-		CCNA_01500	0.16	+0.3
1,610,968	-		CCNA_01500	0.17	+0.2
1,611,020	+		CCNA_01500	0.22	-1.1
1,611,025	-		CCNA_01500	0.22	+0.9
1,611,037	-		CCNA_01500	0.23	-0.1
1,611,070	+		CCNA_01500	0.26	-1.3
1,611,078	-		CCNA_01500	0.27	-0.2
1,611,078	-		CCNA_01500	0.27	-1.2
1,611,095	+		CCNA_01500	0.28	-0.5
1,611,114	+		CCNA_01500	0.30	-1.8
1,611,114	-		CCNA_01500	0.30	+1.1
1,611,166	+		CCNA_01500	0.34	-1.5
1,611,180	-		CCNA_01500	0.36	-0.8
1,611,181	-		CCNA_01500	0.36	+1.6
1,611,183	+		CCNA_01500	0.36	-0.5
1,611,183	+		CCNA_01500	0.36	-1.1
1,611,191	-		CCNA_01500	0.37	+0.2
1,611,201	-		CCNA_01500	0.37	+0.5
1,611,204	+		CCNA_01500	0.38	-1.1
1,611,272	+		CCNA_01500	0.44	-0.9
1,611,280	-		CCNA_01500	0.44	-1.5
1,611,285	-		CCNA_01500	0.45	-0.2
1,611,300	+		CCNA_01500	0.46	+0.3
1,611,300	+		CCNA_01500	0.46	-1.0
1,611,300	+		CCNA_01500	0.46	-2.1
1,611,305	+		CCNA_01500	0.46	+0.6
1,611,357	+		CCNA_01500	0.51	+0.8
1,611,365	-		CCNA_01500	0.52	+1.0
1,611,366	-		CCNA_01500	0.52	+1.8
1,611,418	+		CCNA_01500	0.56	-0.4
1,611,450	+		CCNA_01500	0.59	-0.7
1,611,469	-		CCNA_01500	0.61	-0.2
1,611,527	-		CCNA_01500	0.66	+1.1
1,611,527	-		CCNA_01500	0.66	-0.5
1,611,537	-		CCNA_01500	0.67	-1.0
1,611,624	+		CCNA_01500	0.74	-1.3
1,611,627	-		CCNA_01500	0.74	-0.0
1,611,674	+		CCNA_01500	0.78	-1.7
1,611,675	+		CCNA_01500	0.79	-0.6
1,611,682	-		CCNA_01500	0.79	+1.1
1,611,682	-		CCNA_01500	0.79	+0.3
1,611,682	-		CCNA_01500	0.79	-0.2
1,611,682	-		CCNA_01500	0.79	+1.2
1,611,718	-		CCNA_01500	0.82	-1.3
1,611,771	-		CCNA_01500	0.87	+0.5
1,611,810	-				+0.8
1,611,816	+				+1.4
1,611,816	+				-1.0
1,611,821	+				-0.8
1,611,826	+				+1.2
1,611,876	-				-0.4
1,611,908	+				+0.8
1,611,908	+				+0.6
1,611,911	-				+0.4
1,611,916	-				+0.1
1,611,940	+		CCNA_01501	0.14	-1.7
1,611,940	+		CCNA_01501	0.14	+1.2
1,611,987	-		CCNA_01501	0.26	+0.2
1,611,989	-		CCNA_01501	0.27	-1.9
1,612,002	-		CCNA_01501	0.30	-1.3
1,612,042	-		CCNA_01501	0.41	+0.4
1,612,058	-		CCNA_01501	0.45	+0.3
1,612,172	+		CCNA_01501	0.75	-1.4
1,612,178	+		CCNA_01501	0.76	-0.7
1,612,369	+				-1.7
1,612,374	-		CCNA_01503	0.10	+0.1
1,612,374	-		CCNA_01503	0.10	-0.2
1,612,435	+		CCNA_01503	0.16	-1.4
1,612,443	-		CCNA_01503	0.17	-0.6
1,612,470	+		CCNA_01503	0.19	+0.6
1,612,475	+		CCNA_01503	0.19	+0.9
1,612,478	-		CCNA_01503	0.20	-0.5
1,612,499	+		CCNA_01503	0.22	+1.4
1,612,507	-		CCNA_01503	0.22	+0.8
1,612,573	+		CCNA_01503	0.29	-0.5
1,612,586	-		CCNA_01503	0.30	-1.7
1,612,593	-		CCNA_01503	0.30	-0.9
1,612,618	+		CCNA_01503	0.33	+0.8
1,612,618	+		CCNA_01503	0.33	-0.5
1,612,828	-		CCNA_01503	0.52	-0.4
1,612,839	-		CCNA_01503	0.53	-0.6
1,612,867	-		CCNA_01503	0.56	+0.6
1,612,876	+		CCNA_01503	0.57	-0.5
1,612,912	+		CCNA_01503	0.60	-0.4
1,612,914	-		CCNA_01503	0.60	-0.6
1,612,919	+		CCNA_01503	0.60	+0.8
1,612,945	-		CCNA_01503	0.63	-0.9
1,612,957	-		CCNA_01503	0.64	-1.4
1,613,020	+		CCNA_01503	0.70	+0.3
1,613,020	+		CCNA_01503	0.70	-0.4
1,613,020	+		CCNA_01503	0.70	+0.1
1,613,028	-		CCNA_01503	0.71	-0.2
1,613,092	+		CCNA_01503	0.76	+1.2
1,613,092	+		CCNA_01503	0.76	+0.5
1,613,115	+		CCNA_01503	0.79	-0.0
1,613,115	+		CCNA_01503	0.79	+0.3
1,613,208	+		CCNA_01503	0.87	+0.1
1,613,208	+		CCNA_01503	0.87	+2.2
1,613,208	+		CCNA_01503	0.87	+0.1
1,613,208	+		CCNA_01503	0.87	+0.2
1,613,208	+		CCNA_01503	0.87	-1.6
1,613,216	-		CCNA_01503	0.88	+0.7
1,613,216	-		CCNA_01503	0.88	-1.3
1,613,216	-		CCNA_01503	0.88	-0.5
1,613,216	-		CCNA_01503	0.88	-2.0
1,613,216	-		CCNA_01503	0.88	-0.6
1,613,216	-		CCNA_01503	0.88	-0.1
1,613,216	-		CCNA_01503	0.88	-0.9
1,613,240	-				+0.1
1,613,262	-				+1.3