Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01487

Experiment: PYE with Vancomycin 0.007 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Vancomycin 0.007 mg/ml
1,592,916	+		CCNA_01486	0.20	-1.2
1,592,916	+		CCNA_01486	0.20	+0.1
1,592,921	+		CCNA_01486	0.21	+0.1
1,592,924	-		CCNA_01486	0.21	+0.4
1,592,924	-		CCNA_01486	0.21	+0.4
1,592,924	-		CCNA_01486	0.21	-1.1
1,592,927	+		CCNA_01486	0.21	+0.2
1,592,935	+		CCNA_01486	0.22	+0.6
1,592,955	-				+2.2
1,592,965	+		CCNA_01486	0.25	+0.3
1,592,980	+		CCNA_01486	0.26	-0.5
1,592,988	-		CCNA_01486	0.27	+0.5
1,592,988	-		CCNA_01486	0.27	-0.2
1,593,045	-		CCNA_01486	0.33	+3.2
1,593,053	-		CCNA_01486	0.34	-0.6
1,593,080	-		CCNA_01486	0.36	-1.6
1,593,089	-		CCNA_01486	0.37	-0.7
1,593,139	+		CCNA_01486	0.42	-0.5
1,593,147	-		CCNA_01486	0.43	+0.4
1,593,147	-		CCNA_01486	0.43	-0.1
1,593,151	+		CCNA_01486	0.43	+0.3
1,593,158	-		CCNA_01486	0.44	-0.0
1,593,246	+		CCNA_01486	0.53	+0.3
1,593,251	+		CCNA_01486	0.53	-1.7
1,593,254	-		CCNA_01486	0.54	-1.1
1,593,269	-		CCNA_01486	0.55	-1.2
1,593,269	-		CCNA_01486	0.55	+2.2
1,593,331	+		CCNA_01486	0.61	-1.3
1,593,353	+		CCNA_01486	0.63	-0.0
1,593,373	-		CCNA_01486	0.65	-1.3
1,593,375	+		CCNA_01486	0.65	-0.2
1,593,385	+		CCNA_01486	0.66	-1.0
1,593,385	+		CCNA_01486	0.66	+0.9
1,593,385	+		CCNA_01486	0.66	+1.4
1,593,385	+		CCNA_01486	0.66	+0.6
1,593,391	+		CCNA_01486	0.67	+0.6
1,593,393	-		CCNA_01486	0.67	-0.3
1,593,393	-		CCNA_01486	0.67	-1.0
1,593,393	-		CCNA_01486	0.67	+0.9
1,593,393	-		CCNA_01486	0.67	-1.9
1,593,416	-		CCNA_01486	0.70	+1.0
1,593,424	+		CCNA_01486	0.70	-1.1
1,593,424	+		CCNA_01486	0.70	-1.4
1,593,430	+		CCNA_01486	0.71	+1.0
1,593,432	-		CCNA_01486	0.71	-0.5
1,593,434	+		CCNA_01486	0.71	-1.8
1,593,434	+		CCNA_01486	0.71	-0.4
1,593,434	+		CCNA_01486	0.71	+0.5
1,593,434	+		CCNA_01486	0.71	+0.3
1,593,434	-		CCNA_01486	0.71	-0.3
1,593,448	-		CCNA_01486	0.73	+1.2
1,593,450	+		CCNA_01486	0.73	+0.7
1,593,463	-		CCNA_01486	0.74	-2.0
1,593,547	+		CCNA_01486	0.82	+0.3
1,593,548	+		CCNA_01486	0.83	-1.0
1,593,554	+		CCNA_01486	0.83	-0.1
1,593,567	-		CCNA_01486	0.84	+0.7
1,593,619	-		CCNA_01486	0.90	-0.8
1,593,633	+				+1.6
1,593,687	-				+1.2
1,593,703	-				-1.1
1,593,728	-				-0.8
1,593,778	-				+1.7
1,593,817	+				-0.6
1,593,817	+				-0.7
1,593,825	-				-0.3
1,593,825	-				+0.4
1,593,856	+				+1.0
1,593,877	-				+0.9
1,593,884	-				-0.0
1,593,899	+				+0.9
1,593,945	+				-1.6
1,593,947	+				+1.1
1,593,953	-				-0.4
1,594,021	-		CCNA_01487	0.17	-1.3
1,594,054	+		CCNA_01487	0.21	-1.7
1,594,117	+		CCNA_01487	0.29	-1.2
1,594,121	+		CCNA_01487	0.30	+0.6
1,594,125	-		CCNA_01487	0.31	-1.3
1,594,137	-		CCNA_01487	0.32	-0.4
1,594,139	+		CCNA_01487	0.32	+0.4
1,594,148	-				+2.6
1,594,191	+		CCNA_01487	0.39	+0.5
1,594,191	-		CCNA_01487	0.39	+0.5
1,594,251	-		CCNA_01487	0.47	+2.6
1,594,253	+		CCNA_01487	0.48	+1.0
1,594,253	+		CCNA_01487	0.48	-0.4
1,594,262	+		CCNA_01487	0.49	-1.8
1,594,337	+		CCNA_01487	0.59	+0.4
1,594,419	+		CCNA_01487	0.70	-0.3
1,594,433	+		CCNA_01487	0.72	-1.5
1,594,433	+		CCNA_01487	0.72	-0.2
1,594,433	+		CCNA_01487	0.72	-1.0
1,594,433	+		CCNA_01487	0.72	-0.0
1,594,433	+		CCNA_01487	0.72	-0.0
1,594,434	+		CCNA_01487	0.72	-0.5
1,594,464	+		CCNA_01487	0.76	-0.8
1,594,467	-		CCNA_01487	0.76	+0.5
1,594,469	+		CCNA_01487	0.77	-0.2
1,594,472	-		CCNA_01487	0.77	-0.8
1,594,482	-		CCNA_01487	0.78	+0.3
1,594,504	+		CCNA_01487	0.81	+0.9
1,594,569	+				-0.7
1,594,603	+				+0.8
1,594,607	+				+0.0
1,594,646	-				-0.3
1,594,646	-				-0.0
1,594,666	+				-0.8
1,594,686	+				+0.7
1,594,701	-				-0.3
1,594,701	-				-0.3
1,594,739	+				-0.0
1,594,739	+				+1.2
1,594,799	+				-1.3
1,594,799	+				+0.3
1,594,799	+				-0.3
1,594,799	+				+0.4
1,594,807	+				+0.6
1,594,807	-				+1.6
1,594,820	+				-2.0
1,594,820	+				-0.1
1,594,828	-				+1.4
1,594,828	-				+2.2
1,594,828	-				+0.5
1,594,881	+				+0.7
1,594,916	+				+0.3
1,594,924	-				-0.6
1,594,924	-				-0.1
1,594,928	+				-1.8
1,594,928	+				-1.9
1,594,928	+				+0.0
1,594,928	+				-1.4
1,594,936	-				-0.8
1,594,969	+				-0.6
1,594,974	+				-0.1
1,594,987	-				-0.3
1,595,009	+		CCNA_01488	0.11	-0.0
1,595,017	-		CCNA_01488	0.11	-0.2
1,595,062	+		CCNA_01488	0.14	-0.1
1,595,071	-		CCNA_01488	0.14	-1.3
1,595,094	-		CCNA_01488	0.16	+1.5
1,595,141	-		CCNA_01488	0.18	+1.8
1,595,157	+		CCNA_01488	0.19	-0.0
1,595,157	+		CCNA_01488	0.19	+0.6
1,595,178	-		CCNA_01488	0.20	-2.2
1,595,185	+		CCNA_01488	0.21	-1.0
1,595,193	-		CCNA_01488	0.21	-0.1
1,595,273	+		CCNA_01488	0.26	+1.7
1,595,273	+		CCNA_01488	0.26	-0.6
1,595,273	+		CCNA_01488	0.26	-1.2
1,595,273	+		CCNA_01488	0.26	+0.5
1,595,273	+		CCNA_01488	0.26	-0.8
1,595,281	-		CCNA_01488	0.26	-0.1
1,595,292	+		CCNA_01488	0.27	+1.2
1,595,325	+		CCNA_01488	0.28	+0.6
1,595,327	+		CCNA_01488	0.29	-1.2
1,595,327	+		CCNA_01488	0.29	-0.1
1,595,333	-		CCNA_01488	0.29	+1.5
1,595,333	-		CCNA_01488	0.29	-1.1
1,595,333	-		CCNA_01488	0.29	+0.7
1,595,343	-		CCNA_01488	0.29	-0.7
1,595,396	+		CCNA_01488	0.32	-2.4
1,595,404	-		CCNA_01488	0.33	-0.3
1,595,418	+		CCNA_01488	0.34	-1.7
1,595,430	+		CCNA_01488	0.34	+0.9
1,595,479	-		CCNA_01488	0.37	-1.3
1,595,563	-		CCNA_01488	0.42	-0.5
1,595,573	-		CCNA_01488	0.42	+2.3
1,595,573	-		CCNA_01488	0.42	-0.0
1,595,574	+		CCNA_01488	0.42	-0.9
1,595,582	-		CCNA_01488	0.43	+1.4
1,595,590	+		CCNA_01488	0.43	+1.4
1,595,598	-		CCNA_01488	0.44	+2.5
1,595,633	-		CCNA_01488	0.45	-0.9