Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01354

Experiment: PYE with Vancomycin 0.007 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Vancomycin 0.007 mg/ml
1,467,284	-		CCNA_01353	0.71	+0.5
1,467,334	-		CCNA_01353	0.73	+0.7
1,467,351	+		CCNA_01353	0.74	-1.6
1,467,354	-		CCNA_01353	0.74	+0.9
1,467,378	+				+2.2
1,467,386	-		CCNA_01353	0.76	-0.2
1,467,425	+		CCNA_01353	0.78	+1.2
1,467,425	+		CCNA_01353	0.78	-1.0
1,467,425	+		CCNA_01353	0.78	-1.4
1,467,425	+		CCNA_01353	0.78	-0.5
1,467,425	+		CCNA_01353	0.78	+0.6
1,467,426	-		CCNA_01353	0.78	+0.1
1,467,433	-		CCNA_01353	0.78	+0.7
1,467,433	-		CCNA_01353	0.78	-0.2
1,467,433	-		CCNA_01353	0.78	+0.6
1,467,433	-		CCNA_01353	0.78	-1.1
1,467,433	-		CCNA_01353	0.78	-1.3
1,467,434	-		CCNA_01353	0.78	+0.1
1,467,528	+		CCNA_01353	0.83	+0.9
1,467,555	+		CCNA_01353	0.84	+0.4
1,467,601	+		CCNA_01353	0.86	+0.3
1,467,609	-		CCNA_01353	0.87	+0.7
1,467,618	+		CCNA_01353	0.87	+0.6
1,467,618	+		CCNA_01353	0.87	+0.3
1,467,626	-		CCNA_01353	0.87	-1.3
1,467,626	-		CCNA_01353	0.87	+0.7
1,467,631	-		CCNA_01353	0.88	+3.2
1,467,653	-		CCNA_01353	0.89	-0.5
1,467,732	-				-0.1
1,467,734	-				+1.0
1,467,752	+				-1.3
1,467,756	+				+0.1
1,467,769	-				+0.0
1,467,813	+				+0.5
1,467,821	-				+1.1
1,467,821	-				-0.6
1,467,842	-				-0.3
1,467,842	-				-1.3
1,467,993	-				-2.1
1,468,018	+				-0.2
1,468,018	+				-0.0
1,468,126	+				-0.8
1,468,127	-				+1.4
1,468,131	+				-1.0
1,468,134	-				-0.2
1,468,162	-				-0.5
1,468,175	-				-1.3
1,468,210	+				-0.4
1,468,210	+				+0.7
1,468,211	-				-0.5
1,468,218	-				+0.4
1,468,218	-				+1.2
1,468,247	+				+0.1
1,468,266	+				+0.5
1,468,274	-				+0.8
1,468,274	-				-0.7
1,468,274	-				-0.2
1,468,274	-				-0.3
1,468,302	+				+0.5
1,468,310	-				-0.3
1,468,310	-				-0.7
1,468,358	-		CCNA_01354	0.15	-1.0
1,468,364	-		CCNA_01354	0.15	-0.6
1,468,391	-		CCNA_01354	0.18	-0.6
1,468,425	-		CCNA_01354	0.22	-1.6
1,468,425	-		CCNA_01354	0.22	-1.5
1,468,437	+		CCNA_01354	0.23	+0.3
1,468,458	+		CCNA_01354	0.25	-0.8
1,468,465	+				+1.8
1,468,466	-		CCNA_01354	0.26	-0.1
1,468,466	-		CCNA_01354	0.26	-0.8
1,468,501	-		CCNA_01354	0.29	+0.7
1,468,529	-		CCNA_01354	0.32	-0.8
1,468,536	+		CCNA_01354	0.33	-0.8
1,468,544	-		CCNA_01354	0.34	-0.7
1,468,544	-		CCNA_01354	0.34	-1.2
1,468,544	-		CCNA_01354	0.34	-1.5
1,468,563	+		CCNA_01354	0.36	+1.8
1,468,565	-		CCNA_01354	0.36	+0.7
1,468,650	+		CCNA_01354	0.44	+2.2
1,468,658	-		CCNA_01354	0.45	-0.7
1,468,668	-		CCNA_01354	0.46	-0.2
1,468,670	+		CCNA_01354	0.46	-1.0
1,468,678	-		CCNA_01354	0.47	+0.8
1,468,715	+		CCNA_01354	0.51	+1.6
1,468,736	-		CCNA_01354	0.53	-0.5
1,468,776	-		CCNA_01354	0.57	-0.8
1,468,805	+		CCNA_01354	0.60	+1.6
1,468,813	-		CCNA_01354	0.61	-1.2
1,468,813	-		CCNA_01354	0.61	-1.0
1,468,813	-		CCNA_01354	0.61	-0.1
1,468,902	+		CCNA_01354	0.70	-0.4
1,468,907	+		CCNA_01354	0.70	-0.4
1,468,907	+		CCNA_01354	0.70	-0.7
1,468,910	-		CCNA_01354	0.71	+0.8
1,468,932	+		CCNA_01354	0.73	-1.5
1,468,935	-		CCNA_01354	0.73	+0.8
1,468,964	+		CCNA_01354	0.76	-1.2
1,468,966	-		CCNA_01354	0.76	-1.7
1,469,003	-		CCNA_01354	0.80	-2.0
1,469,025	+		CCNA_01354	0.82	-2.2
1,469,025	+		CCNA_01354	0.82	-0.6
1,469,033	-		CCNA_01354	0.83	-0.8
1,469,131	-				+1.6
1,469,132	+				-1.6
1,469,198	+				-1.0
1,469,206	-				-1.5
1,469,297	+				+0.7
1,469,324	+				+1.6
1,469,358	+				+1.6
1,469,403	+				+0.5
1,469,403	+				-0.5
1,469,411	-				+0.7
1,469,413	+				-0.4
1,469,426	-				+0.5
1,469,447	-				-0.4
1,469,464	-		CCNA_01355	0.11	-0.2
1,469,526	+		CCNA_01355	0.18	+0.6
1,469,597	+		CCNA_01355	0.26	-0.3
1,469,640	+		CCNA_01355	0.31	+0.3
1,469,640	+		CCNA_01355	0.31	-0.2
1,469,640	+		CCNA_01355	0.31	-0.2
1,469,648	-		CCNA_01355	0.32	+0.7
1,469,650	+		CCNA_01355	0.32	-0.8
1,469,650	+		CCNA_01355	0.32	-1.2
1,469,650	+		CCNA_01355	0.32	+1.2
1,469,653	-		CCNA_01355	0.33	-0.3
1,469,658	-		CCNA_01355	0.33	+2.2
1,469,658	-		CCNA_01355	0.33	-1.1
1,469,699	+		CCNA_01355	0.38	+0.3
1,469,699	+		CCNA_01355	0.38	+0.6
1,469,760	+		CCNA_01355	0.45	+1.7
1,469,760	+		CCNA_01355	0.45	+0.4
1,469,768	-		CCNA_01355	0.46	-0.2
1,469,774	-		CCNA_01355	0.47	-0.5
1,469,883	-		CCNA_01355	0.59	+2.2
1,469,911	+		CCNA_01355	0.62	-1.0
1,469,948	+		CCNA_01355	0.66	+1.5
1,469,955	-		CCNA_01355	0.67	+1.4
1,469,956	-		CCNA_01355	0.67	+0.2
1,470,008	-		CCNA_01355	0.73	-0.4
1,470,040	+		CCNA_01355	0.77	+0.4
1,470,056	+		CCNA_01355	0.79	-0.2
1,470,066	+		CCNA_01355	0.80	+0.1
1,470,123	+		CCNA_01355	0.86	+0.3
1,470,123	+		CCNA_01355	0.86	+0.3
1,470,131	-		CCNA_01355	0.87	+0.8
1,470,147	+		CCNA_01355	0.89	+1.6
1,470,155	+				-1.1
1,470,155	-				-0.7
1,470,157	+				-0.5
1,470,178	-				+0.7