Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01283

Experiment: PYE with Vancomycin 0.007 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Vancomycin 0.007 mg/ml
1,408,640	+				-0.3
1,408,648	-				-0.7
1,408,699	-				+0.7
1,408,701	-				+0.2
1,408,704	-				-1.1
1,408,817	+		CCNA_01282	0.18	+1.3
1,408,852	-		CCNA_01282	0.22	-0.6
1,408,860	-		CCNA_01282	0.23	+2.5
1,408,882	-		CCNA_01282	0.25	-0.4
1,408,940	-		CCNA_01282	0.30	-0.7
1,408,946	+		CCNA_01282	0.31	-1.4
1,408,963	+		CCNA_01282	0.32	-0.5
1,409,003	+		CCNA_01282	0.36	+0.3
1,409,082	-		CCNA_01282	0.44	+1.8
1,409,089	-		CCNA_01282	0.44	-3.1
1,409,096	+		CCNA_01282	0.45	-0.4
1,409,096	+		CCNA_01282	0.45	+2.4
1,409,106	+		CCNA_01282	0.46	-0.6
1,409,119	+		CCNA_01282	0.47	-0.5
1,409,138	+		CCNA_01282	0.49	+2.1
1,409,163	-		CCNA_01282	0.52	-1.4
1,409,171	+		CCNA_01282	0.52	+2.1
1,409,203	+		CCNA_01282	0.55	+1.1
1,409,210	+		CCNA_01282	0.56	+0.1
1,409,281	-		CCNA_01282	0.63	+0.4
1,409,291	-		CCNA_01282	0.64	-2.2
1,409,321	-		CCNA_01282	0.67	-1.1
1,409,364	+		CCNA_01282	0.71	+0.5
1,409,364	+		CCNA_01282	0.71	+0.1
1,409,371	-				+1.7
1,409,372	-		CCNA_01282	0.72	+0.1
1,409,372	-		CCNA_01282	0.72	-1.7
1,409,418	+		CCNA_01282	0.76	+0.2
1,409,426	-		CCNA_01282	0.77	+0.5
1,409,436	-		CCNA_01282	0.78	+0.4
1,409,480	+		CCNA_01282	0.82	-0.1
1,409,613	+				-0.6
1,409,613	+				+0.6
1,409,613	+				-2.0
1,409,715	-		CCNA_01283	0.12	-0.0
1,409,736	-		CCNA_01283	0.13	-0.8
1,409,744	-		CCNA_01283	0.14	+0.2
1,409,762	+		CCNA_01283	0.16	+0.5
1,409,775	-		CCNA_01283	0.17	+1.3
1,409,796	-		CCNA_01283	0.18	-0.3
1,409,865	-		CCNA_01283	0.24	-0.7
1,409,909	+		CCNA_01283	0.28	-1.0
1,409,921	-		CCNA_01283	0.29	+0.2
1,409,986	-		CCNA_01283	0.34	+0.5
1,409,987	-		CCNA_01283	0.34	-2.2
1,410,012	+		CCNA_01283	0.37	-1.8
1,410,036	+		CCNA_01283	0.39	-1.2
1,410,119	-		CCNA_01283	0.45	-0.5
1,410,177	+		CCNA_01283	0.50	-2.0
1,410,185	-		CCNA_01283	0.51	+0.2
1,410,265	+				+3.1
1,410,273	-		CCNA_01283	0.58	+0.6
1,410,273	-		CCNA_01283	0.58	+1.1
1,410,273	-		CCNA_01283	0.58	-0.7
1,410,273	-		CCNA_01283	0.58	+0.7
1,410,296	+		CCNA_01283	0.60	-1.4
1,410,363	+		CCNA_01283	0.66	-0.2
1,410,370	+		CCNA_01283	0.66	+0.4
1,410,387	-		CCNA_01283	0.68	-1.1
1,410,397	-		CCNA_01283	0.69	+1.3
1,410,420	-		CCNA_01283	0.71	+1.1
1,410,519	+		CCNA_01283	0.79	+0.5
1,410,520	-		CCNA_01283	0.79	-2.0
1,410,527	-		CCNA_01283	0.80	-1.8
1,410,561	+		CCNA_01283	0.82	-1.5
1,410,561	+		CCNA_01283	0.82	+0.4
1,410,563	-		CCNA_01283	0.83	-1.4
1,410,569	+		CCNA_01283	0.83	-0.3
1,410,627	+		CCNA_01283	0.88	-1.0
1,410,635	-		CCNA_01283	0.89	+1.2
1,410,651	+		CCNA_01283	0.90	+0.1
1,410,709	-				-0.3
1,410,711	+				+0.5
1,410,719	-				-0.4
1,410,758	+				-2.6
1,410,787	-		CCNA_01284	0.14	-0.8
1,410,850	-		CCNA_01284	0.20	-0.9
1,410,869	+		CCNA_01284	0.22	+2.5
1,410,888	-		CCNA_01284	0.24	-0.7
1,410,894	+		CCNA_01284	0.25	+1.1
1,410,902	-		CCNA_01284	0.26	+1.0
1,410,934	-		CCNA_01284	0.29	-1.8
1,410,956	-		CCNA_01284	0.32	-0.4
1,410,972	+		CCNA_01284	0.33	-1.0
1,411,007	-		CCNA_01284	0.37	-1.7
1,411,007	-		CCNA_01284	0.37	-0.0
1,411,027	+		CCNA_01284	0.39	+0.1
1,411,027	-		CCNA_01284	0.39	+0.9
1,411,036	+		CCNA_01284	0.40	+0.4
1,411,040	-		CCNA_01284	0.40	+1.7
1,411,052	+		CCNA_01284	0.42	+1.7
1,411,052	+		CCNA_01284	0.42	+0.5
1,411,052	+		CCNA_01284	0.42	-0.2
1,411,052	+		CCNA_01284	0.42	+0.4
1,411,052	+		CCNA_01284	0.42	-1.5
1,411,052	+		CCNA_01284	0.42	+0.7
1,411,052	+		CCNA_01284	0.42	-0.2
1,411,060	-		CCNA_01284	0.43	-0.1
1,411,060	-		CCNA_01284	0.43	+1.1
1,411,060	-		CCNA_01284	0.43	-0.3
1,411,060	-		CCNA_01284	0.43	+0.4
1,411,060	-		CCNA_01284	0.43	-0.6
1,411,060	-		CCNA_01284	0.43	-1.8
1,411,072	+		CCNA_01284	0.44	-1.5
1,411,112	+		CCNA_01284	0.48	+0.2
1,411,120	-		CCNA_01284	0.49	+0.2
1,411,181	+		CCNA_01284	0.55	-0.7
1,411,191	+		CCNA_01284	0.56	-0.3
1,411,259	-		CCNA_01284	0.64	-0.3
1,411,328	+		CCNA_01284	0.71	+0.3
1,411,331	-		CCNA_01284	0.71	+0.7
1,411,333	+		CCNA_01284	0.71	+0.7
1,411,341	+		CCNA_01284	0.72	-1.1
1,411,437	+		CCNA_01284	0.82	+0.1
1,411,447	+		CCNA_01284	0.83	+0.3
1,411,464	+		CCNA_01284	0.85	+0.4
1,411,464	+		CCNA_01284	0.85	+1.5
1,411,505	-		CCNA_01284	0.89	+2.2
1,411,511	-				+0.3
1,411,515	+				-0.4
1,411,523	-				-1.1
1,411,533	-				-0.5
1,411,534	-				+0.4
1,411,631	+				+0.9
1,411,664	+				-0.2
1,411,672	-				-1.0
1,411,677	+				-0.1
1,411,707	-		CCNA_01285	0.11	+1.3
1,411,707	-		CCNA_01285	0.11	-2.5
1,411,733	+		CCNA_01285	0.13	+0.7
1,411,733	+		CCNA_01285	0.13	-0.7
1,411,733	+		CCNA_01285	0.13	-0.2
1,411,741	-		CCNA_01285	0.14	-0.8
1,411,768	-		CCNA_01285	0.17	-1.1
1,411,768	-		CCNA_01285	0.17	-0.4
1,411,769	+		CCNA_01285	0.17	+0.7