Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01232

Experiment: PYE with Vancomycin 0.007 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Vancomycin 0.007 mg/ml
1,358,803	+				-0.8
1,358,811	-				+1.0
1,358,840	+		CCNA_01231	0.10	+0.0
1,358,908	-		CCNA_01231	0.17	+0.4
1,358,908	-		CCNA_01231	0.17	+1.8
1,358,927	+		CCNA_01231	0.19	-1.2
1,358,934	-		CCNA_01231	0.19	-1.4
1,358,958	-		CCNA_01231	0.22	-0.9
1,359,019	-		CCNA_01231	0.28	+1.0
1,359,071	+		CCNA_01231	0.33	-0.9
1,359,114	-		CCNA_01231	0.37	-0.8
1,359,152	+		CCNA_01231	0.41	-2.0
1,359,191	-		CCNA_01231	0.45	+0.9
1,359,221	+		CCNA_01231	0.47	+0.4
1,359,229	-		CCNA_01231	0.48	-1.4
1,359,231	-		CCNA_01231	0.48	-1.1
1,359,231	-		CCNA_01231	0.48	-0.8
1,359,233	+		CCNA_01231	0.49	+1.3
1,359,238	+		CCNA_01231	0.49	+0.0
1,359,250	+		CCNA_01231	0.50	-1.6
1,359,251	+		CCNA_01231	0.50	-0.1
1,359,253	-		CCNA_01231	0.51	+0.1
1,359,253	-		CCNA_01231	0.51	-0.5
1,359,270	+		CCNA_01231	0.52	-1.2
1,359,278	-		CCNA_01231	0.53	+1.5
1,359,278	-		CCNA_01231	0.53	-1.2
1,359,298	+		CCNA_01231	0.55	-0.4
1,359,306	-		CCNA_01231	0.56	-0.6
1,359,323	-		CCNA_01231	0.58	+0.9
1,359,331	+		CCNA_01231	0.58	+0.7
1,359,331	+		CCNA_01231	0.58	-0.5
1,359,331	+		CCNA_01231	0.58	-1.4
1,359,339	-		CCNA_01231	0.59	+0.0
1,359,339	-		CCNA_01231	0.59	+0.5
1,359,340	-		CCNA_01231	0.59	-1.5
1,359,345	-		CCNA_01231	0.60	-0.7
1,359,353	+		CCNA_01231	0.60	-0.8
1,359,361	-		CCNA_01231	0.61	-0.8
1,359,363	+		CCNA_01231	0.61	-0.5
1,359,371	-		CCNA_01231	0.62	+1.0
1,359,376	+		CCNA_01231	0.63	+1.3
1,359,384	-		CCNA_01231	0.64	-0.9
1,359,404	+		CCNA_01231	0.65	-0.8
1,359,404	+		CCNA_01231	0.65	-1.6
1,359,412	-		CCNA_01231	0.66	-0.1
1,359,412	-		CCNA_01231	0.66	-1.9
1,359,433	+		CCNA_01231	0.68	+0.3
1,359,448	+		CCNA_01231	0.70	-0.3
1,359,471	+		CCNA_01231	0.72	-3.3
1,359,471	+		CCNA_01231	0.72	-2.4
1,359,471	+		CCNA_01231	0.72	-0.1
1,359,471	+		CCNA_01231	0.72	-1.2
1,359,471	+		CCNA_01231	0.72	-0.9
1,359,471	+		CCNA_01231	0.72	-0.9
1,359,471	+		CCNA_01231	0.72	+1.3
1,359,477	-		CCNA_01231	0.73	-1.1
1,359,479	-		CCNA_01231	0.73	-0.6
1,359,479	-		CCNA_01231	0.73	+1.8
1,359,479	-		CCNA_01231	0.73	+0.5
1,359,479	-		CCNA_01231	0.73	-1.5
1,359,479	-		CCNA_01231	0.73	+1.3
1,359,500	+		CCNA_01231	0.75	+0.8
1,359,506	-		CCNA_01231	0.76	-0.5
1,359,508	-		CCNA_01231	0.76	-2.7
1,359,508	-		CCNA_01231	0.76	-1.0
1,359,508	-		CCNA_01231	0.76	+0.2
1,359,534	+		CCNA_01231	0.78	-1.1
1,359,539	+		CCNA_01231	0.79	+0.2
1,359,580	-		CCNA_01231	0.83	-1.7
1,359,589	+		CCNA_01231	0.84	-0.6
1,359,601	+		CCNA_01231	0.85	+0.5
1,359,609	-		CCNA_01231	0.86	+0.9
1,359,617	-		CCNA_01231	0.86	+1.0
1,359,629	-		CCNA_01231	0.88	+0.3
1,359,633	+		CCNA_01231	0.88	-0.8
1,359,748	+				-0.5
1,359,769	+				-0.2
1,359,777	-				-1.5
1,359,779	+				-1.5
1,359,787	-				+0.2
1,359,841	-		CCNA_01232	0.17	-1.9
1,359,852	-		CCNA_01232	0.19	-1.0
1,359,858	-		CCNA_01232	0.21	-1.6
1,359,874	+		CCNA_01232	0.24	+0.2
1,359,924	-		CCNA_01232	0.34	-0.8
1,359,967	+		CCNA_01232	0.43	-0.4
1,359,967	+		CCNA_01232	0.43	+1.0
1,359,967	+		CCNA_01232	0.43	+0.7
1,359,975	+		CCNA_01232	0.45	+0.0
1,359,983	-		CCNA_01232	0.47	-0.3
1,359,985	-		CCNA_01232	0.47	-2.8
1,359,985	-		CCNA_01232	0.47	-0.7
1,359,998	+		CCNA_01232	0.50	-0.4
1,360,020	-		CCNA_01232	0.54	-0.1
1,360,082	-		CCNA_01232	0.67	-0.5
1,360,103	+		CCNA_01232	0.72	-2.2
1,360,111	-		CCNA_01232	0.73	-1.6
1,360,111	-		CCNA_01232	0.73	+3.1
1,360,200	-				+0.7
1,360,220	-				-0.3
1,360,220	-				-1.5
1,360,231	+				+1.9
1,360,388	-		CCNA_01233	0.15	+0.8
1,360,432	-		CCNA_01233	0.20	+0.5
1,360,436	+		CCNA_01233	0.20	+0.2
1,360,436	+		CCNA_01233	0.20	+0.8
1,360,467	+		CCNA_01233	0.24	+0.8
1,360,476	+		CCNA_01233	0.25	+0.1
1,360,476	+		CCNA_01233	0.25	-0.6
1,360,484	-		CCNA_01233	0.25	-0.9
1,360,484	-		CCNA_01233	0.25	+0.0
1,360,501	+		CCNA_01233	0.27	+1.1
1,360,509	-		CCNA_01233	0.28	+0.1
1,360,520	-				+0.8
1,360,524	-		CCNA_01233	0.30	-0.6
1,360,545	+		CCNA_01233	0.32	-0.9
1,360,635	-		CCNA_01233	0.42	+0.8
1,360,653	-		CCNA_01233	0.44	+0.4
1,360,666	+		CCNA_01233	0.45	+0.7
1,360,674	-		CCNA_01233	0.46	+0.1
1,360,684	-		CCNA_01233	0.47	-1.5
1,360,745	-		CCNA_01233	0.54	-2.3
1,360,768	+		CCNA_01233	0.57	-0.5
1,360,788	+		CCNA_01233	0.59	-1.2
1,360,797	+		CCNA_01233	0.60	-1.3
1,360,816	+		CCNA_01233	0.62	-0.6
1,360,822	-		CCNA_01233	0.63	+0.2
1,360,837	+		CCNA_01233	0.64	-1.4
1,360,839	-		CCNA_01233	0.64	+0.1
1,360,847	+		CCNA_01233	0.65	+1.5
1,360,847	+		CCNA_01233	0.65	+0.4
1,360,847	+		CCNA_01233	0.65	+1.0
1,360,855	-		CCNA_01233	0.66	-0.4
1,360,871	+		CCNA_01233	0.68	-0.4
1,360,872	-		CCNA_01233	0.68	-1.2
1,360,914	+		CCNA_01233	0.73	-0.8
1,360,929	-		CCNA_01233	0.74	+0.8
1,360,938	+		CCNA_01233	0.75	+1.3
1,360,986	+		CCNA_01233	0.81	+1.3
1,360,986	+		CCNA_01233	0.81	-0.7
1,360,988	-		CCNA_01233	0.81	-0.5
1,361,057	+		CCNA_01233	0.88	+2.3
1,361,062	+		CCNA_01233	0.89	+1.3
1,361,062	+		CCNA_01233	0.89	-0.9
1,361,065	-		CCNA_01233	0.89	+2.0
1,361,072	-				+1.5
1,361,086	+				-0.0
1,361,089	-				-0.1
1,361,091	+				+1.5
1,361,091	+				+1.3
1,361,091	+				-0.6
1,361,091	+				+0.1
1,361,091	+				-0.1
1,361,094	-				-2.0
1,361,096	-				-0.3
1,361,099	-				+0.7
1,361,099	-				+1.3
1,361,099	-				-0.3
1,361,124	+				+0.3
1,361,132	-				+1.3
1,361,132	-				-0.6
1,361,171	-				+1.0
1,361,237	+				-1.7