Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01231

Experiment: PYE with Vancomycin 0.007 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Vancomycin 0.007 mg/ml
1,357,746	+		CCNA_01230	0.39	-1.0
1,357,775	+		CCNA_01230	0.41	-0.4
1,357,783	-		CCNA_01230	0.42	-0.7
1,357,862	-		CCNA_01230	0.46	+0.7
1,357,889	+		CCNA_01230	0.48	-0.3
1,357,889	+		CCNA_01230	0.48	+1.3
1,357,894	+		CCNA_01230	0.48	-1.8
1,357,897	-		CCNA_01230	0.48	+1.3
1,357,897	-		CCNA_01230	0.48	+0.7
1,357,897	-		CCNA_01230	0.48	+1.0
1,357,985	+		CCNA_01230	0.54	+1.1
1,357,991	-		CCNA_01230	0.54	-0.3
1,357,997	+		CCNA_01230	0.54	-0.7
1,358,004	+		CCNA_01230	0.55	-1.3
1,358,045	+		CCNA_01230	0.57	+0.2
1,358,045	+		CCNA_01230	0.57	-1.5
1,358,045	+		CCNA_01230	0.57	+0.7
1,358,053	-		CCNA_01230	0.58	-0.6
1,358,053	-		CCNA_01230	0.58	+0.5
1,358,076	+		CCNA_01230	0.59	-2.2
1,358,084	+		CCNA_01230	0.60	-2.1
1,358,084	-		CCNA_01230	0.60	-0.0
1,358,137	+		CCNA_01230	0.63	+0.1
1,358,191	+		CCNA_01230	0.66	-0.2
1,358,276	+		CCNA_01230	0.71	+2.5
1,358,276	+		CCNA_01230	0.71	-0.5
1,358,281	+		CCNA_01230	0.72	-1.3
1,358,284	-		CCNA_01230	0.72	-1.7
1,358,284	-		CCNA_01230	0.72	+0.5
1,358,307	+		CCNA_01230	0.73	-1.4
1,358,307	+		CCNA_01230	0.73	-1.4
1,358,307	+		CCNA_01230	0.73	-0.3
1,358,307	+		CCNA_01230	0.73	-2.3
1,358,307	+		CCNA_01230	0.73	+0.5
1,358,307	+		CCNA_01230	0.73	-1.9
1,358,315	-		CCNA_01230	0.74	-1.2
1,358,315	-		CCNA_01230	0.74	+0.4
1,358,315	-		CCNA_01230	0.74	+0.2
1,358,315	-		CCNA_01230	0.74	-0.1
1,358,315	-		CCNA_01230	0.74	-1.3
1,358,339	-		CCNA_01230	0.75	-0.5
1,358,376	+		CCNA_01230	0.77	+0.3
1,358,396	-		CCNA_01230	0.79	-0.8
1,358,412	-		CCNA_01230	0.80	-0.1
1,358,412	-		CCNA_01230	0.80	+0.7
1,358,412	-		CCNA_01230	0.80	+0.2
1,358,414	-		CCNA_01230	0.80	-1.5
1,358,421	+		CCNA_01230	0.80	-1.8
1,358,424	+		CCNA_01230	0.80	+0.8
1,358,429	+		CCNA_01230	0.81	+0.5
1,358,429	+		CCNA_01230	0.81	-1.6
1,358,429	+		CCNA_01230	0.81	-0.2
1,358,437	-		CCNA_01230	0.81	-1.0
1,358,437	-		CCNA_01230	0.81	+0.4
1,358,437	-		CCNA_01230	0.81	-0.0
1,358,437	-		CCNA_01230	0.81	+1.1
1,358,437	-		CCNA_01230	0.81	+2.1
1,358,464	-		CCNA_01230	0.83	+3.8
1,358,473	+		CCNA_01230	0.83	-0.6
1,358,487	-		CCNA_01230	0.84	+0.7
1,358,539	+		CCNA_01230	0.87	-0.3
1,358,565	-		CCNA_01230	0.89	+1.0
1,358,569	+		CCNA_01230	0.89	-0.3
1,358,579	+		CCNA_01230	0.90	-1.3
1,358,587	-				+0.3
1,358,593	+				+1.5
1,358,717	+				+1.1
1,358,717	+				-1.8
1,358,720	-				-1.7
1,358,803	+				-0.8
1,358,811	-				+1.0
1,358,840	+		CCNA_01231	0.10	+0.0
1,358,908	-		CCNA_01231	0.17	+0.4
1,358,908	-		CCNA_01231	0.17	+1.8
1,358,927	+		CCNA_01231	0.19	-1.2
1,358,934	-		CCNA_01231	0.19	-1.4
1,358,958	-		CCNA_01231	0.22	-0.9
1,359,019	-		CCNA_01231	0.28	+1.0
1,359,071	+		CCNA_01231	0.33	-0.9
1,359,114	-		CCNA_01231	0.37	-0.8
1,359,152	+		CCNA_01231	0.41	-2.0
1,359,191	-		CCNA_01231	0.45	+0.9
1,359,221	+		CCNA_01231	0.47	+0.4
1,359,229	-		CCNA_01231	0.48	-1.4
1,359,231	-		CCNA_01231	0.48	-1.1
1,359,231	-		CCNA_01231	0.48	-0.8
1,359,233	+		CCNA_01231	0.49	+1.3
1,359,238	+		CCNA_01231	0.49	+0.0
1,359,250	+		CCNA_01231	0.50	-1.6
1,359,251	+		CCNA_01231	0.50	-0.1
1,359,253	-		CCNA_01231	0.51	+0.1
1,359,253	-		CCNA_01231	0.51	-0.5
1,359,270	+		CCNA_01231	0.52	-1.2
1,359,278	-		CCNA_01231	0.53	+1.5
1,359,278	-		CCNA_01231	0.53	-1.2
1,359,298	+		CCNA_01231	0.55	-0.4
1,359,306	-		CCNA_01231	0.56	-0.6
1,359,323	-		CCNA_01231	0.58	+0.9
1,359,331	+		CCNA_01231	0.58	+0.7
1,359,331	+		CCNA_01231	0.58	-0.5
1,359,331	+		CCNA_01231	0.58	-1.4
1,359,339	-		CCNA_01231	0.59	+0.0
1,359,339	-		CCNA_01231	0.59	+0.5
1,359,340	-		CCNA_01231	0.59	-1.5
1,359,345	-		CCNA_01231	0.60	-0.7
1,359,353	+		CCNA_01231	0.60	-0.8
1,359,361	-		CCNA_01231	0.61	-0.8
1,359,363	+		CCNA_01231	0.61	-0.5
1,359,371	-		CCNA_01231	0.62	+1.0
1,359,376	+		CCNA_01231	0.63	+1.3
1,359,384	-		CCNA_01231	0.64	-0.9
1,359,404	+		CCNA_01231	0.65	-0.8
1,359,404	+		CCNA_01231	0.65	-1.6
1,359,412	-		CCNA_01231	0.66	-0.1
1,359,412	-		CCNA_01231	0.66	-1.9
1,359,433	+		CCNA_01231	0.68	+0.3
1,359,448	+		CCNA_01231	0.70	-0.3
1,359,471	+		CCNA_01231	0.72	-3.3
1,359,471	+		CCNA_01231	0.72	-2.4
1,359,471	+		CCNA_01231	0.72	-0.1
1,359,471	+		CCNA_01231	0.72	-1.2
1,359,471	+		CCNA_01231	0.72	-0.9
1,359,471	+		CCNA_01231	0.72	-0.9
1,359,471	+		CCNA_01231	0.72	+1.3
1,359,477	-		CCNA_01231	0.73	-1.1
1,359,479	-		CCNA_01231	0.73	-0.6
1,359,479	-		CCNA_01231	0.73	+1.8
1,359,479	-		CCNA_01231	0.73	+0.5
1,359,479	-		CCNA_01231	0.73	-1.5
1,359,479	-		CCNA_01231	0.73	+1.3
1,359,500	+		CCNA_01231	0.75	+0.8
1,359,506	-		CCNA_01231	0.76	-0.5
1,359,508	-		CCNA_01231	0.76	-2.7
1,359,508	-		CCNA_01231	0.76	-1.0
1,359,508	-		CCNA_01231	0.76	+0.2
1,359,534	+		CCNA_01231	0.78	-1.1
1,359,539	+		CCNA_01231	0.79	+0.2
1,359,580	-		CCNA_01231	0.83	-1.7
1,359,589	+		CCNA_01231	0.84	-0.6
1,359,601	+		CCNA_01231	0.85	+0.5
1,359,609	-		CCNA_01231	0.86	+0.9
1,359,617	-		CCNA_01231	0.86	+1.0
1,359,629	-		CCNA_01231	0.88	+0.3
1,359,633	+		CCNA_01231	0.88	-0.8
1,359,748	+				-0.5
1,359,769	+				-0.2
1,359,777	-				-1.5
1,359,779	+				-1.5
1,359,787	-				+0.2
1,359,841	-		CCNA_01232	0.17	-1.9
1,359,852	-		CCNA_01232	0.19	-1.0
1,359,858	-		CCNA_01232	0.21	-1.6
1,359,874	+		CCNA_01232	0.24	+0.2
1,359,924	-		CCNA_01232	0.34	-0.8
1,359,967	+		CCNA_01232	0.43	-0.4
1,359,967	+		CCNA_01232	0.43	+1.0
1,359,967	+		CCNA_01232	0.43	+0.7
1,359,975	+		CCNA_01232	0.45	+0.0
1,359,983	-		CCNA_01232	0.47	-0.3
1,359,985	-		CCNA_01232	0.47	-2.8
1,359,985	-		CCNA_01232	0.47	-0.7
1,359,998	+		CCNA_01232	0.50	-0.4
1,360,020	-		CCNA_01232	0.54	-0.1
1,360,082	-		CCNA_01232	0.67	-0.5
1,360,103	+		CCNA_01232	0.72	-2.2
1,360,111	-		CCNA_01232	0.73	-1.6
1,360,111	-		CCNA_01232	0.73	+3.1
1,360,200	-				+0.7
1,360,220	-				-0.3
1,360,220	-				-1.5
1,360,231	+				+1.9
1,360,388	-		CCNA_01233	0.15	+0.8
1,360,432	-		CCNA_01233	0.20	+0.5
1,360,436	+		CCNA_01233	0.20	+0.2
1,360,436	+		CCNA_01233	0.20	+0.8
1,360,467	+		CCNA_01233	0.24	+0.8
1,360,476	+		CCNA_01233	0.25	+0.1
1,360,476	+		CCNA_01233	0.25	-0.6
1,360,484	-		CCNA_01233	0.25	-0.9
1,360,484	-		CCNA_01233	0.25	+0.0
1,360,501	+		CCNA_01233	0.27	+1.1
1,360,509	-		CCNA_01233	0.28	+0.1
1,360,520	-				+0.8
1,360,524	-		CCNA_01233	0.30	-0.6
1,360,545	+		CCNA_01233	0.32	-0.9
1,360,635	-		CCNA_01233	0.42	+0.8
1,360,653	-		CCNA_01233	0.44	+0.4
1,360,666	+		CCNA_01233	0.45	+0.7
1,360,674	-		CCNA_01233	0.46	+0.1
1,360,684	-		CCNA_01233	0.47	-1.5
1,360,745	-		CCNA_01233	0.54	-2.3