Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01205

Experiment: PYE with Vancomycin 0.007 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Vancomycin 0.007 mg/ml
1,330,972	-				+1.9
1,330,997	-		CCNA_01204	0.11	+0.0
1,331,000	+		CCNA_01204	0.11	-0.4
1,331,024	-		CCNA_01204	0.14	+0.6
1,331,099	-		CCNA_01204	0.22	+0.5
1,331,133	-		CCNA_01204	0.26	-1.2
1,331,143	-		CCNA_01204	0.27	-1.2
1,331,172	-		CCNA_01204	0.30	+2.2
1,331,206	+		CCNA_01204	0.33	-2.2
1,331,214	-		CCNA_01204	0.34	+1.7
1,331,219	+		CCNA_01204	0.35	+0.4
1,331,274	-		CCNA_01204	0.40	-0.1
1,331,285	+		CCNA_01204	0.42	+0.8
1,331,304	+		CCNA_01204	0.44	-0.5
1,331,304	+		CCNA_01204	0.44	-1.5
1,331,304	+		CCNA_01204	0.44	-0.8
1,331,304	+		CCNA_01204	0.44	-1.4
1,331,312	-		CCNA_01204	0.44	+0.6
1,331,312	-		CCNA_01204	0.44	+1.3
1,331,312	-		CCNA_01204	0.44	+0.8
1,331,312	-		CCNA_01204	0.44	-1.8
1,331,312	-		CCNA_01204	0.44	-0.7
1,331,312	-		CCNA_01204	0.44	+0.2
1,331,330	+		CCNA_01204	0.46	-0.4
1,331,330	+		CCNA_01204	0.46	+0.5
1,331,343	+		CCNA_01204	0.48	-1.8
1,331,343	+		CCNA_01204	0.48	-0.6
1,331,351	-		CCNA_01204	0.49	-1.7
1,331,351	-		CCNA_01204	0.49	-1.6
1,331,381	-		CCNA_01204	0.52	+1.3
1,331,386	+		CCNA_01204	0.52	+0.0
1,331,389	-		CCNA_01204	0.53	-0.4
1,331,394	-		CCNA_01204	0.53	-0.9
1,331,397	+		CCNA_01204	0.53	-0.8
1,331,397	+		CCNA_01204	0.53	-1.0
1,331,405	-		CCNA_01204	0.54	+0.8
1,331,409	+		CCNA_01204	0.55	-1.0
1,331,409	+		CCNA_01204	0.55	+2.1
1,331,417	-		CCNA_01204	0.55	-0.1
1,331,423	+		CCNA_01204	0.56	-2.6
1,331,433	+		CCNA_01204	0.57	+1.9
1,331,433	+		CCNA_01204	0.57	+3.2
1,331,444	+		CCNA_01204	0.58	-0.8
1,331,444	+		CCNA_01204	0.58	-2.0
1,331,450	+		CCNA_01204	0.59	+1.3
1,331,488	+		CCNA_01204	0.63	-0.7
1,331,504	+		CCNA_01204	0.65	-0.5
1,331,504	+		CCNA_01204	0.65	+0.1
1,331,504	+		CCNA_01204	0.65	+0.1
1,331,519	+		CCNA_01204	0.66	-0.7
1,331,527	-		CCNA_01204	0.67	-0.3
1,331,529	+		CCNA_01204	0.67	-0.9
1,331,538	-		CCNA_01204	0.68	-2.3
1,331,563	-		CCNA_01204	0.71	+0.8
1,331,571	+		CCNA_01204	0.72	-2.4
1,331,577	-		CCNA_01204	0.72	+0.3
1,331,579	+		CCNA_01204	0.73	-1.3
1,331,587	-		CCNA_01204	0.73	-0.7
1,331,587	-		CCNA_01204	0.73	-1.1
1,331,589	-		CCNA_01204	0.74	-0.0
1,331,593	-		CCNA_01204	0.74	+1.0
1,331,605	+		CCNA_01204	0.75	+0.1
1,331,663	+		CCNA_01204	0.81	+0.2
1,331,706	-		CCNA_01204	0.86	+0.5
1,331,726	+		CCNA_01204	0.88	-1.2
1,331,726	+		CCNA_01204	0.88	+0.7
1,331,734	-		CCNA_01204	0.89	-0.4
1,331,741	+		CCNA_01204	0.90	-1.9
1,331,749	-				-1.2
1,331,749	-				-0.1
1,331,802	-				-0.0
1,331,852	+				+0.7
1,331,882	+				+0.5
1,331,895	-				-1.5
1,331,898	+				-1.2
1,331,898	+				+0.2
1,331,906	-				-1.0
1,331,906	-				+0.8
1,331,906	-				-0.6
1,331,906	-				-0.7
1,331,911	-				+2.5
1,331,979	+				-1.2
1,331,987	-				+0.5
1,332,003	+				+0.2
1,332,029	+				-0.6
1,332,029	+				-1.2
1,332,032	-				+3.5
1,332,032	-				-0.7
1,332,113	-		CCNA_01205	0.14	+0.2
1,332,123	+		CCNA_01205	0.15	-0.1
1,332,131	-		CCNA_01205	0.16	+0.8
1,332,133	+		CCNA_01205	0.16	+0.4
1,332,136	-		CCNA_01205	0.17	+1.3
1,332,140	+		CCNA_01205	0.17	-0.2
1,332,141	-		CCNA_01205	0.17	+0.0
1,332,141	-		CCNA_01205	0.17	-0.9
1,332,148	-		CCNA_01205	0.18	+1.0
1,332,148	-		CCNA_01205	0.18	+0.3
1,332,164	+		CCNA_01205	0.19	+0.2
1,332,164	+		CCNA_01205	0.19	-0.3
1,332,164	+		CCNA_01205	0.19	+0.2
1,332,169	+		CCNA_01205	0.20	-0.5
1,332,190	-		CCNA_01205	0.22	-1.3
1,332,199	+		CCNA_01205	0.23	+1.8
1,332,247	-		CCNA_01205	0.28	-0.2
1,332,248	+		CCNA_01205	0.28	-0.5
1,332,248	+		CCNA_01205	0.28	+0.4
1,332,250	-		CCNA_01205	0.28	-2.4
1,332,278	+				+3.1
1,332,281	-		CCNA_01205	0.31	+0.3
1,332,286	-		CCNA_01205	0.32	-1.6
1,332,286	-		CCNA_01205	0.32	-2.1
1,332,296	-		CCNA_01205	0.33	-1.4
1,332,296	-		CCNA_01205	0.33	-0.9
1,332,314	-		CCNA_01205	0.35	+0.9
1,332,334	+		CCNA_01205	0.37	-0.0
1,332,389	+		CCNA_01205	0.42	-0.1
1,332,389	+		CCNA_01205	0.42	-0.4
1,332,389	+		CCNA_01205	0.42	+0.4
1,332,389	+		CCNA_01205	0.42	+0.5
1,332,389	+		CCNA_01205	0.42	-0.2
1,332,397	-		CCNA_01205	0.43	+0.8
1,332,397	-		CCNA_01205	0.43	-0.4
1,332,397	-		CCNA_01205	0.43	-0.5
1,332,397	-		CCNA_01205	0.43	+0.2
1,332,397	-		CCNA_01205	0.43	-1.1
1,332,407	-		CCNA_01205	0.44	+0.4
1,332,427	+		CCNA_01205	0.46	-0.8
1,332,445	-		CCNA_01205	0.48	+0.2
1,332,449	+		CCNA_01205	0.48	-1.9
1,332,458	+		CCNA_01205	0.49	-0.8
1,332,466	-		CCNA_01205	0.50	-1.2
1,332,466	-		CCNA_01205	0.50	-0.6
1,332,517	+		CCNA_01205	0.55	-0.2
1,332,581	+		CCNA_01205	0.62	-0.1
1,332,608	-		CCNA_01205	0.64	+0.8
1,332,627	+		CCNA_01205	0.66	-2.1
1,332,675	-		CCNA_01205	0.71	-0.5
1,332,680	+		CCNA_01205	0.72	+1.3
1,332,683	+		CCNA_01205	0.72	+0.1
1,332,735	+		CCNA_01205	0.77	+1.0
1,332,768	-		CCNA_01205	0.81	-1.4
1,332,775	-		CCNA_01205	0.81	+1.0
1,332,790	+		CCNA_01205	0.83	-1.2
1,332,805	-		CCNA_01205	0.84	-1.0
1,332,807	+		CCNA_01205	0.85	-0.6
1,332,814	-		CCNA_01205	0.85	+0.0
1,332,815	-		CCNA_01205	0.85	+0.5
1,332,824	-		CCNA_01205	0.86	+1.1
1,332,824	-		CCNA_01205	0.86	+0.2
1,332,869	-				-1.5
1,332,915	-				+1.5
1,332,960	-				+0.0
1,332,967	+				+1.0
1,332,967	+				+1.0
1,332,975	-				+0.8
1,332,975	-				+0.1
1,332,975	-				-0.5
1,332,975	-				-0.2
1,333,005	-				-1.3
1,333,009	-				-1.1
1,333,009	-				-0.9
1,333,023	+				+1.3
1,333,061	+		CCNA_01206	0.14	+0.8
1,333,061	+		CCNA_01206	0.14	+0.7
1,333,061	+		CCNA_01206	0.14	+0.1
1,333,069	-		CCNA_01206	0.15	-1.3
1,333,069	-		CCNA_01206	0.15	+0.1
1,333,078	+		CCNA_01206	0.16	+2.0
1,333,085	-		CCNA_01206	0.17	+0.3
1,333,086	-		CCNA_01206	0.17	+0.4
1,333,088	+		CCNA_01206	0.17	-1.0
1,333,187	-		CCNA_01206	0.31	-2.2
1,333,278	+		CCNA_01206	0.43	-0.1
1,333,312	-		CCNA_01206	0.48	-0.7
1,333,316	+		CCNA_01206	0.48	-0.0
1,333,336	+		CCNA_01206	0.51	+0.1
1,333,336	+		CCNA_01206	0.51	-3.0
1,333,336	+		CCNA_01206	0.51	-1.2
1,333,338	-		CCNA_01206	0.51	+0.1
1,333,349	-		CCNA_01206	0.53	+0.1
1,333,355	-		CCNA_01206	0.54	-0.0
1,333,362	+		CCNA_01206	0.54	+0.5
1,333,373	+		CCNA_01206	0.56	-0.9
1,333,393	+		CCNA_01206	0.59	+1.8
1,333,406	-		CCNA_01206	0.60	+0.0
1,333,408	+		CCNA_01206	0.61	-0.5
1,333,414	+		CCNA_01206	0.62	+0.5
1,333,427	-		CCNA_01206	0.63	-0.3
1,333,454	+		CCNA_01206	0.67	-1.2
1,333,474	+		CCNA_01206	0.70	+0.3
1,333,482	-		CCNA_01206	0.71	+0.8
1,333,482	-		CCNA_01206	0.71	+0.0
1,333,511	+		CCNA_01206	0.75	-0.0
1,333,511	+		CCNA_01206	0.75	-0.3
1,333,519	-		CCNA_01206	0.76	+1.1
1,333,523	-		CCNA_01206	0.76	+0.4
1,333,561	+		CCNA_01206	0.81	-0.3
1,333,569	-		CCNA_01206	0.83	-1.0
1,333,611	+		CCNA_01206	0.88	+0.0
1,333,658	+				-1.0
1,333,661	-				-0.8
1,333,661	-				+1.0
1,333,666	-				-0.7
1,333,668	+				-0.6
1,333,668	+				+1.5
1,333,692	-				-0.6
1,333,734	+				-0.0
1,333,735	+				+0.5
1,333,755	+				-0.0
1,333,786	-				-1.0
1,333,805	+				-0.4
1,333,819	-		CCNA_01207	0.11	-0.5
1,333,819	-		CCNA_01207	0.11	-0.4
1,333,831	-		CCNA_01207	0.12	-0.9
1,333,839	+		CCNA_01207	0.12	-0.9
1,333,847	-		CCNA_01207	0.13	-0.3
1,333,888	+		CCNA_01207	0.16	+0.6
1,333,913	-		CCNA_01207	0.19	+0.1
1,333,913	-		CCNA_01207	0.19	+0.7
1,333,913	-		CCNA_01207	0.19	-2.1
1,333,955	+		CCNA_01207	0.22	-1.7