Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01191

Experiment: PYE with Vancomycin 0.007 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Vancomycin 0.007 mg/ml
1,310,432	-		CCNA_01190	0.43	+1.4
1,310,465	+		CCNA_01190	0.45	-0.1
1,310,472	-		CCNA_01190	0.46	-0.4
1,310,499	-		CCNA_01190	0.48	+0.4
1,310,562	-		CCNA_01190	0.52	-0.9
1,310,633	-		CCNA_01190	0.56	+0.5
1,310,633	-				+1.5
1,310,633	-		CCNA_01190	0.56	+0.9
1,310,672	-		CCNA_01190	0.59	-2.0
1,310,681	+		CCNA_01190	0.59	-1.3
1,310,706	+		CCNA_01190	0.61	+0.1
1,310,714	-		CCNA_01190	0.62	+0.9
1,310,722	+		CCNA_01190	0.62	-0.5
1,310,730	-		CCNA_01190	0.63	-0.8
1,310,772	+		CCNA_01190	0.65	-0.6
1,310,794	-		CCNA_01190	0.67	+0.3
1,310,799	-		CCNA_01190	0.67	+1.3
1,310,804	+		CCNA_01190	0.67	-0.1
1,310,872	-		CCNA_01190	0.72	+0.3
1,310,890	+		CCNA_01190	0.73	-0.8
1,310,898	-		CCNA_01190	0.74	+1.5
1,310,898	-		CCNA_01190	0.74	+0.8
1,310,922	-		CCNA_01190	0.75	-1.3
1,310,922	-		CCNA_01190	0.75	-0.4
1,310,922	-		CCNA_01190	0.75	-0.8
1,310,938	+		CCNA_01190	0.76	-1.2
1,311,009	+		CCNA_01190	0.81	-0.5
1,311,078	+		CCNA_01190	0.85	-0.7
1,311,106	-		CCNA_01190	0.87	-0.8
1,311,248	+				+0.1
1,311,248	+				+0.8
1,311,256	+				+0.4
1,311,256	-				-0.9
1,311,282	+				-1.0
1,311,300	+				-1.6
1,311,331	-				-0.7
1,311,331	-				+1.8
1,311,331	-				+0.8
1,311,341	-				-0.4
1,311,354	+				-0.4
1,311,378	+				-2.8
1,311,385	-				-1.1
1,311,405	+				+0.1
1,311,424	+				-0.9
1,311,431	+				-0.8
1,311,434	-				+0.6
1,311,443	+				-0.7
1,311,443	+				+0.2
1,311,473	+		CCNA_01191	0.12	-1.1
1,311,481	-		CCNA_01191	0.13	+0.3
1,311,481	-		CCNA_01191	0.13	-1.4
1,311,516	+		CCNA_01191	0.16	-0.4
1,311,529	-		CCNA_01191	0.17	-1.6
1,311,606	+		CCNA_01191	0.23	-1.7
1,311,614	-		CCNA_01191	0.24	-1.2
1,311,614	-		CCNA_01191	0.24	+0.5
1,311,631	+		CCNA_01191	0.25	+0.0
1,311,639	-		CCNA_01191	0.26	-0.2
1,311,667	-		CCNA_01191	0.28	-0.2
1,311,667	-		CCNA_01191	0.28	-0.2
1,311,680	+		CCNA_01191	0.29	+0.8
1,311,680	+		CCNA_01191	0.29	-1.3
1,311,688	-		CCNA_01191	0.30	+0.5
1,311,717	+		CCNA_01191	0.32	+1.2
1,311,717	-		CCNA_01191	0.32	-0.8
1,311,731	+		CCNA_01191	0.33	+0.5
1,311,772	+		CCNA_01191	0.36	+0.2
1,311,780	-		CCNA_01191	0.37	-0.5
1,311,780	-		CCNA_01191	0.37	-1.0
1,311,801	+		CCNA_01191	0.39	-1.4
1,311,813	+		CCNA_01191	0.40	-0.5
1,311,827	-		CCNA_01191	0.41	-0.2
1,311,871	+		CCNA_01191	0.44	+0.1
1,311,909	+		CCNA_01191	0.47	-1.2
1,311,909	+		CCNA_01191	0.47	-2.6
1,311,909	+		CCNA_01191	0.47	+0.1
1,311,909	+		CCNA_01191	0.47	+0.9
1,311,909	+		CCNA_01191	0.47	-1.0
1,311,917	-		CCNA_01191	0.48	+2.2
1,311,917	-		CCNA_01191	0.48	+0.7
1,311,917	-		CCNA_01191	0.48	-1.4
1,311,917	-		CCNA_01191	0.48	-0.5
1,311,917	-		CCNA_01191	0.48	-1.9
1,312,031	+		CCNA_01191	0.57	+1.5
1,312,049	+		CCNA_01191	0.59	-1.4
1,312,056	+		CCNA_01191	0.59	-2.0
1,312,092	+		CCNA_01191	0.62	+0.8
1,312,100	-		CCNA_01191	0.63	-0.2
1,312,111	+		CCNA_01191	0.64	-1.1
1,312,111	+		CCNA_01191	0.64	-2.6
1,312,119	-		CCNA_01191	0.64	-0.8
1,312,129	-		CCNA_01191	0.65	+2.1
1,312,191	-		CCNA_01191	0.70	+0.0
1,312,191	-		CCNA_01191	0.70	-1.1
1,312,205	-		CCNA_01191	0.71	+1.1
1,312,250	+		CCNA_01191	0.75	-1.0
1,312,258	-		CCNA_01191	0.76	-1.0
1,312,312	-		CCNA_01191	0.80	+0.8
1,312,367	-		CCNA_01191	0.84	-0.0
1,312,367	-		CCNA_01191	0.84	-0.6
1,312,402	-		CCNA_01191	0.87	-1.3
1,312,423	+		CCNA_01191	0.89	+0.0
1,312,438	-				+1.1
1,312,552	+				+0.6
1,312,556	-				-0.3
1,312,605	-				-0.9
1,312,618	-				+0.1
1,312,620	+				-1.5
1,312,676	+		CCNA_01192	0.13	-0.6
1,312,686	+		CCNA_01192	0.14	-0.6
1,312,707	-		CCNA_01192	0.16	-0.6
1,312,709	+		CCNA_01192	0.17	-0.4
1,312,730	+		CCNA_01192	0.19	-0.8
1,312,816	-		CCNA_01192	0.28	+0.6
1,312,842	+		CCNA_01192	0.31	-1.2
1,312,849	-		CCNA_01192	0.32	-0.2
1,312,856	+		CCNA_01192	0.33	-0.7
1,312,864	-		CCNA_01192	0.33	+1.8
1,312,912	+		CCNA_01192	0.39	-1.0
1,312,920	-		CCNA_01192	0.40	-0.5
1,312,952	-		CCNA_01192	0.43	-0.1
1,312,963	+		CCNA_01192	0.44	-0.4
1,312,971	-		CCNA_01192	0.45	-0.5
1,312,971	-		CCNA_01192	0.45	+2.2
1,312,989	+		CCNA_01192	0.47	-0.9
1,312,997	-		CCNA_01192	0.48	+0.3
1,312,997	-		CCNA_01192	0.48	+0.4
1,313,046	+		CCNA_01192	0.53	+0.9
1,313,054	-		CCNA_01192	0.54	-0.9
1,313,054	-		CCNA_01192	0.54	-0.1
1,313,094	+		CCNA_01192	0.58	-1.7
1,313,107	+		CCNA_01192	0.60	+2.5
1,313,108	+		CCNA_01192	0.60	-0.7
1,313,116	-		CCNA_01192	0.61	+0.5
1,313,127	+		CCNA_01192	0.62	-1.4
1,313,147	+		CCNA_01192	0.64	-2.3
1,313,148	+		CCNA_01192	0.64	-1.8
1,313,154	-		CCNA_01192	0.65	-1.4
1,313,157	-		CCNA_01192	0.65	+0.4
1,313,181	-		CCNA_01192	0.68	+0.5
1,313,191	-		CCNA_01192	0.69	+1.4
1,313,216	+		CCNA_01192	0.72	-1.6
1,313,235	+		CCNA_01192	0.74	+1.0
1,313,240	+		CCNA_01192	0.74	+0.6
1,313,247	-		CCNA_01192	0.75	-0.2
1,313,255	+		CCNA_01192	0.76	-1.6
1,313,282	-		CCNA_01192	0.79	-1.1
1,313,308	+		CCNA_01192	0.81	+1.0
1,313,316	-		CCNA_01192	0.82	+0.3
1,313,338	-		CCNA_01192	0.85	+0.3
1,313,417	+				+1.4