Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01162

Experiment: PYE with Vancomycin 0.007 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Vancomycin 0.007 mg/ml
1,268,968	+		CCNA_01161	0.33	-0.3
1,268,968	+		CCNA_01161	0.33	-0.3
1,269,036	+		CCNA_01161	0.38	+0.5
1,269,037	-		CCNA_01161	0.38	+1.5
1,269,088	-		CCNA_01161	0.42	+0.3
1,269,096	-		CCNA_01161	0.43	+0.8
1,269,099	+		CCNA_01161	0.43	-0.7
1,269,116	+		CCNA_01161	0.44	+0.1
1,269,116	-		CCNA_01161	0.44	-0.7
1,269,129	+		CCNA_01161	0.45	-1.2
1,269,129	+		CCNA_01161	0.45	-2.2
1,269,129	+		CCNA_01161	0.45	+1.0
1,269,129	+		CCNA_01161	0.45	-1.1
1,269,129	+		CCNA_01161	0.45	+0.7
1,269,129	+		CCNA_01161	0.45	+0.4
1,269,137	-		CCNA_01161	0.46	-1.2
1,269,137	-		CCNA_01161	0.46	-0.7
1,269,150	+		CCNA_01161	0.47	-0.8
1,269,150	+		CCNA_01161	0.47	-0.1
1,269,150	+		CCNA_01161	0.47	-0.1
1,269,150	+		CCNA_01161	0.47	-1.1
1,269,231	+		CCNA_01161	0.53	+1.5
1,269,231	+		CCNA_01161	0.53	+1.2
1,269,231	+		CCNA_01161	0.53	+1.1
1,269,231	+		CCNA_01161	0.53	+2.1
1,269,301	+		CCNA_01161	0.58	+0.3
1,269,309	-		CCNA_01161	0.59	-3.1
1,269,376	+		CCNA_01161	0.64	+0.7
1,269,376	+		CCNA_01161	0.64	-0.2
1,269,452	+		CCNA_01161	0.69	+0.7
1,269,497	+		CCNA_01161	0.73	+0.9
1,269,548	+		CCNA_01161	0.76	-1.2
1,269,561	+		CCNA_01161	0.77	+0.6
1,269,561	+		CCNA_01161	0.77	-1.5
1,269,561	+		CCNA_01161	0.77	-1.9
1,269,561	+		CCNA_01161	0.77	-0.7
1,269,569	-		CCNA_01161	0.78	-0.9
1,269,574	-		CCNA_01161	0.78	+0.1
1,269,574	-		CCNA_01161	0.78	+1.8
1,269,576	+		CCNA_01161	0.78	-0.1
1,269,579	-		CCNA_01161	0.79	+0.9
1,269,619	-		CCNA_01161	0.82	+0.5
1,269,645	-		CCNA_01161	0.84	-1.2
1,269,650	-		CCNA_01161	0.84	+0.6
1,269,661	-		CCNA_01161	0.85	-0.2
1,269,670	+		CCNA_01161	0.85	+0.6
1,269,670	+		CCNA_01161	0.85	+0.2
1,269,749	-				-0.6
1,269,749	-				-3.4
1,269,756	+				+1.3
1,269,767	+				-1.9
1,269,771	-				+0.8
1,269,799	+				-1.0
1,269,813	+				+0.7
1,269,821	-				-0.9
1,269,821	-				-0.2
1,269,821	-				+1.8
1,269,866	-				+0.3
1,269,882	+				-0.1
1,269,884	+				-1.6
1,270,034	+				-2.1
1,270,059	-				+0.4
1,270,071	-				-0.3
1,270,074	+				-1.0
1,270,079	+				-1.5
1,270,090	-				-0.5
1,270,096	+				-1.2
1,270,104	-				-1.5
1,270,109	-				+1.0
1,270,153	+				-2.0
1,270,182	+		CCNA_01162	0.11	-1.0
1,270,189	-		CCNA_01162	0.11	-0.2
1,270,189	-		CCNA_01162	0.11	-0.6
1,270,201	+		CCNA_01162	0.11	-1.1
1,270,209	-		CCNA_01162	0.12	-2.4
1,270,209	-		CCNA_01162	0.12	-0.1
1,270,209	-		CCNA_01162	0.12	-0.3
1,270,209	-		CCNA_01162	0.12	-0.6
1,270,276	+		CCNA_01162	0.15	+0.1
1,270,299	-		CCNA_01162	0.16	-2.4
1,270,314	-		CCNA_01162	0.16	-1.6
1,270,350	+		CCNA_01162	0.18	-0.3
1,270,360	+		CCNA_01162	0.18	-1.3
1,270,392	-		CCNA_01162	0.20	-0.1
1,270,418	+		CCNA_01162	0.21	-0.5
1,270,436	+		CCNA_01162	0.22	-0.5
1,270,445	-		CCNA_01162	0.22	-1.5
1,270,450	-		CCNA_01162	0.22	-1.1
1,270,470	-		CCNA_01162	0.23	+0.7
1,270,527	-		CCNA_01162	0.26	-1.1
1,270,560	+		CCNA_01162	0.27	-0.0
1,270,560	+		CCNA_01162	0.27	-0.1
1,270,560	+		CCNA_01162	0.27	-1.7
1,270,568	-		CCNA_01162	0.27	-0.0
1,270,568	-		CCNA_01162	0.27	-1.0
1,270,569	+		CCNA_01162	0.27	-2.5
1,270,576	+		CCNA_01162	0.28	-2.5
1,270,576	+		CCNA_01162	0.28	+0.9
1,270,584	-		CCNA_01162	0.28	+2.1
1,270,615	-		CCNA_01162	0.29	+0.3
1,270,615	-		CCNA_01162	0.29	+0.9
1,270,615	-		CCNA_01162	0.29	-1.1
1,270,634	+		CCNA_01162	0.30	+0.2
1,270,651	+		CCNA_01162	0.31	-0.8
1,270,659	+		CCNA_01162	0.31	-1.4
1,270,684	+				+2.5
1,270,696	+		CCNA_01162	0.33	+1.1
1,270,757	+		CCNA_01162	0.36	-1.0
1,270,817	+		CCNA_01162	0.38	-2.0
1,270,824	+		CCNA_01162	0.38	+0.2
1,270,849	+		CCNA_01162	0.40	+0.2
1,270,849	+		CCNA_01162	0.40	-1.6
1,270,887	-		CCNA_01162	0.41	-0.3
1,270,889	-		CCNA_01162	0.41	+1.1
1,270,903	-		CCNA_01162	0.42	-0.8
1,270,948	-		CCNA_01162	0.44	-0.1
1,270,955	+		CCNA_01162	0.44	-1.8
1,270,955	+		CCNA_01162	0.44	-1.8
1,270,955	+		CCNA_01162	0.44	-0.3
1,270,956	-		CCNA_01162	0.44	-1.4
1,270,963	-		CCNA_01162	0.44	-1.2
1,270,963	-		CCNA_01162	0.44	+0.2
1,270,963	-		CCNA_01162	0.44	-1.2
1,270,963	-		CCNA_01162	0.44	+1.5
1,270,986	+		CCNA_01162	0.45	-2.5
1,270,994	-		CCNA_01162	0.46	+0.0
1,271,088	+		CCNA_01162	0.50	+0.2
1,271,096	-		CCNA_01162	0.50	-1.5
1,271,096	-		CCNA_01162	0.50	-1.7
1,271,097	-		CCNA_01162	0.50	-0.7
1,271,097	-		CCNA_01162	0.50	+1.5
1,271,170	+		CCNA_01162	0.53	-1.1
1,271,170	+		CCNA_01162	0.53	-0.0
1,271,194	-		CCNA_01162	0.55	-1.0
1,271,227	+		CCNA_01162	0.56	-1.8
1,271,246	-		CCNA_01162	0.57	-0.4
1,271,261	-		CCNA_01162	0.57	-1.2
1,271,301	+		CCNA_01162	0.59	-1.7
1,271,358	-		CCNA_01162	0.62	+0.9
1,271,382	-		CCNA_01162	0.63	-2.4
1,271,404	-		CCNA_01162	0.64	-2.0
1,271,415	-		CCNA_01162	0.64	+0.2
1,271,437	-		CCNA_01162	0.65	-0.3
1,271,513	+		CCNA_01162	0.68	-0.6
1,271,553	+		CCNA_01162	0.70	+0.2
1,271,605	+		CCNA_01162	0.72	-2.1
1,271,666	-		CCNA_01162	0.75	-1.0
1,271,670	+		CCNA_01162	0.75	-1.0
1,271,680	+		CCNA_01162	0.76	-0.9
1,271,688	-		CCNA_01162	0.76	+2.1
1,271,690	-		CCNA_01162	0.76	-1.2
1,271,811	-		CCNA_01162	0.81	-1.0
1,271,877	+		CCNA_01162	0.84	-1.3
1,271,885	-		CCNA_01162	0.85	-2.1
1,271,885	-		CCNA_01162	0.85	-1.8
1,271,907	-		CCNA_01162	0.85	-2.3
1,271,910	-		CCNA_01162	0.86	-0.0
1,271,910	-		CCNA_01162	0.86	-0.3
1,271,931	-		CCNA_01162	0.87	-1.0
1,271,968	+		CCNA_01162	0.88	-1.0
1,271,968	+		CCNA_01162	0.88	-0.6
1,271,968	+		CCNA_01162	0.88	-1.3
1,271,976	-		CCNA_01162	0.88	+1.0
1,271,976	-		CCNA_01162	0.88	-0.7
1,271,978	+		CCNA_01162	0.89	+0.4
1,271,987	+		CCNA_01162	0.89	+0.3
1,271,995	-		CCNA_01162	0.89	-0.0
1,272,003	-		CCNA_01162	0.90	-0.7
1,272,057	+				-0.7
1,272,121	-				-1.3
1,272,139	+				-0.2
1,272,139	+				-1.2
1,272,162	+				-1.3
1,272,200	+				-0.9
1,272,202	+				-1.0
1,272,205	+				-1.6
1,272,218	-				+0.3
1,272,238	-				-1.4
1,272,243	+				+1.3
1,272,243	-				-1.4
1,272,280	+				+0.4
1,272,288	-				-0.3
1,272,348	+				-0.2
1,272,356	+				-1.3
1,272,364	-				+0.8
1,272,426	+				+0.2
1,272,445	-				-0.0
1,272,486	+				-1.3
1,272,486	+				-1.9
1,272,486	+				-0.0
1,272,494	-				-0.6
1,272,502	-				+1.8
1,272,504	-				-0.6
1,272,521	+				+0.1
1,272,527	+				-0.5
1,272,527	+				+0.9
1,272,529	-				+0.9
1,272,529	-				-0.0
1,272,540	-				-0.6
1,272,541	+				-1.7
1,272,543	+				+0.6
1,272,552	+				+0.9
1,272,617	-				-1.0
1,272,633	+				-1.4
1,272,633	+				-1.0
1,272,643	+				-1.4
1,272,648	+				-1.5
1,272,648	+				+1.7
1,272,648	+				-1.4
1,272,648	+				-1.5
1,272,656	-				+0.9
1,272,673	+				-0.5
1,272,680	+				+0.5
1,272,710	+				-0.3
1,272,778	+				+0.9
1,272,800	-				+1.1
1,272,800	-				-0.9
1,272,800	-				-1.1
1,272,800	-				-0.4
1,272,819	-				-0.1
1,272,867	+				+3.3
1,272,867	+				-0.1
1,272,867	+				-0.1
1,272,875	-				-1.0
1,272,875	-				+0.3
1,272,875	-				-0.5
1,272,896	+				-1.4
1,272,902	-				+0.1
1,272,947	-				-1.2
1,272,954	+				+0.6
1,272,962	-				-2.1
1,272,962	-				+0.8
1,273,024	-				+0.7
1,273,026	+				+2.0
1,273,027	-				+2.4
1,273,045	+				-0.8
1,273,050	+				+0.8
1,273,058	-				-0.1
1,273,065	-				-1.2
1,273,146	+				-1.1
1,273,165	+				+2.8
1,273,170	+				+0.2
1,273,170	+				-0.1
1,273,170	+				+1.2
1,273,178	-				-0.9
1,273,178	-				+0.7
1,273,179	+				+1.4
1,273,179	+				+1.8
1,273,182	+				+0.5
1,273,184	+				-1.4
1,273,187	-				+0.5
1,273,192	-				-1.0
1,273,194	+				+0.3
1,273,195	-				-1.9
1,273,206	+				-0.4
1,273,206	+				+0.9
1,273,217	+				+0.1
1,273,235	-				+0.5