Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01047

Experiment: PYE with Vancomycin 0.007 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Vancomycin 0.007 mg/ml
1,141,264	-		CCNA_01046	0.26	+0.3
1,141,277	+		CCNA_01046	0.28	-0.4
1,141,285	-		CCNA_01046	0.29	+1.0
1,141,285	-		CCNA_01046	0.29	+0.3
1,141,285	-		CCNA_01046	0.29	-0.2
1,141,285	-		CCNA_01046	0.29	+0.4
1,141,354	-		CCNA_01046	0.40	+0.7
1,141,372	-		CCNA_01046	0.43	-1.7
1,141,380	+		CCNA_01046	0.44	-0.9
1,141,388	-		CCNA_01046	0.45	-2.0
1,141,388	-		CCNA_01046	0.45	+1.2
1,141,400	+		CCNA_01046	0.47	+0.2
1,141,420	+		CCNA_01046	0.50	-0.8
1,141,421	-		CCNA_01046	0.50	-0.8
1,141,421	-		CCNA_01046	0.50	+0.4
1,141,428	-		CCNA_01046	0.51	+0.1
1,141,428	-		CCNA_01046	0.51	+1.0
1,141,441	-		CCNA_01046	0.53	-0.7
1,141,454	+		CCNA_01046	0.55	-0.4
1,141,462	-		CCNA_01046	0.56	+1.6
1,141,462	-		CCNA_01046	0.56	-0.4
1,141,467	-		CCNA_01046	0.57	-0.2
1,141,478	+		CCNA_01046	0.59	-1.4
1,141,478	+		CCNA_01046	0.59	-0.7
1,141,478	+		CCNA_01046	0.59	-0.8
1,141,486	-		CCNA_01046	0.60	+0.1
1,141,486	-		CCNA_01046	0.60	-0.7
1,141,493	-		CCNA_01046	0.61	-0.6
1,141,508	-		CCNA_01046	0.63	+0.8
1,141,508	-		CCNA_01046	0.63	-1.8
1,141,556	+		CCNA_01046	0.71	-0.2
1,141,577	+		CCNA_01046	0.74	-0.2
1,141,578	-		CCNA_01046	0.74	+0.3
1,141,585	-		CCNA_01046	0.75	+2.4
1,141,609	+		CCNA_01046	0.79	+0.4
1,141,617	+		CCNA_01046	0.80	-0.5
1,141,638	+		CCNA_01046	0.83	+0.7
1,141,638	+		CCNA_01046	0.83	+0.2
1,141,646	-		CCNA_01046	0.85	-1.5
1,141,659	-				+6.5
1,141,660	+		CCNA_01046	0.87	-1.0
1,141,668	-		CCNA_01046	0.88	+0.1
1,141,668	-		CCNA_01046	0.88	+0.4
1,141,693	+				-0.4
1,141,693	+				-1.4
1,141,701	-				-1.0
1,141,701	-				-0.8
1,141,701	-				-0.9
1,141,701	-				-2.5
1,141,720	+				-0.3
1,141,727	+				-0.7
1,141,735	-				-3.3
1,141,782	+				-0.5
1,142,008	-				-2.4
1,142,193	-				-1.3
1,142,245	-				+0.6
1,142,271	+				+2.4
1,142,271	+				-1.3
1,142,271	+				+0.8
1,142,271	-				+2.2
1,142,279	-				-1.2
1,142,337	-				-0.4
1,142,383	+				-0.4
1,142,398	-				-0.0
1,142,425	-				+0.6
1,142,480	+				-0.2
1,142,488	-				-1.2
1,142,524	+		CCNA_01047	0.11	-2.1
1,142,529	+		CCNA_01047	0.11	-0.7
1,142,537	-		CCNA_01047	0.11	-0.3
1,142,537	-		CCNA_01047	0.11	-1.6
1,142,537	-		CCNA_01047	0.11	+0.2
1,142,542	-		CCNA_01047	0.11	-0.3
1,142,543	-		CCNA_01047	0.11	-0.9
1,142,547	-		CCNA_01047	0.11	-1.4
1,142,548	-		CCNA_01047	0.11	+0.5
1,142,548	-		CCNA_01047	0.11	+0.2
1,142,553	+		CCNA_01047	0.12	-1.1
1,142,553	+		CCNA_01047	0.12	-0.6
1,142,553	+		CCNA_01047	0.12	-1.2
1,142,561	-		CCNA_01047	0.12	+0.1
1,142,561	-		CCNA_01047	0.12	-2.2
1,142,578	+		CCNA_01047	0.13	-0.8
1,142,627	-		CCNA_01047	0.14	-0.4
1,142,669	+		CCNA_01047	0.16	-1.4
1,142,670	+		CCNA_01047	0.16	-0.1
1,142,740	-		CCNA_01047	0.19	-0.6
1,142,740	-		CCNA_01047	0.19	+1.0
1,142,768	+		CCNA_01047	0.20	+0.6
1,142,776	-		CCNA_01047	0.20	+0.4
1,142,776	-		CCNA_01047	0.20	-0.4
1,142,810	-		CCNA_01047	0.21	+0.6
1,142,825	+		CCNA_01047	0.22	-0.4
1,142,828	-		CCNA_01047	0.22	-0.5
1,142,833	-		CCNA_01047	0.22	-1.0
1,142,855	-		CCNA_01047	0.23	-0.4
1,142,881	+		CCNA_01047	0.24	+1.6
1,142,882	+		CCNA_01047	0.24	+0.6
1,142,882	+		CCNA_01047	0.24	+4.0
1,142,882	+		CCNA_01047	0.24	-0.4
1,142,929	+		CCNA_01047	0.26	-0.4
1,142,934	+		CCNA_01047	0.26	-1.8
1,142,934	+		CCNA_01047	0.26	+0.3
1,142,942	-		CCNA_01047	0.26	+0.1
1,142,952	-		CCNA_01047	0.26	-1.3
1,143,002	+		CCNA_01047	0.28	+1.0
1,143,010	-		CCNA_01047	0.29	-1.6
1,143,010	-		CCNA_01047	0.29	+0.1
1,143,041	+		CCNA_01047	0.30	+0.5
1,143,051	-		CCNA_01047	0.30	-0.0
1,143,140	-		CCNA_01047	0.33	-0.5
1,143,142	+		CCNA_01047	0.33	-0.4
1,143,157	-		CCNA_01047	0.34	-2.5
1,143,164	+		CCNA_01047	0.34	-1.0
1,143,179	+		CCNA_01047	0.35	-0.2
1,143,187	-		CCNA_01047	0.35	+0.3
1,143,248	-		CCNA_01047	0.37	-0.6
1,143,250	+		CCNA_01047	0.37	+0.7
1,143,250	+		CCNA_01047	0.37	-0.7
1,143,266	+		CCNA_01047	0.38	+1.4
1,143,295	+		CCNA_01047	0.39	-0.6
1,143,298	+		CCNA_01047	0.39	-1.6
1,143,306	-		CCNA_01047	0.39	+0.5
1,143,331	+		CCNA_01047	0.40	+1.2
1,143,338	+		CCNA_01047	0.41	-2.0
1,143,339	-		CCNA_01047	0.41	-0.6
1,143,354	+		CCNA_01047	0.41	+0.5
1,143,373	-		CCNA_01047	0.42	+1.4
1,143,379	-		CCNA_01047	0.42	-0.6
1,143,397	-		CCNA_01047	0.43	+0.5
1,143,404	-		CCNA_01047	0.43	-0.6
1,143,414	-		CCNA_01047	0.43	-0.1
1,143,422	-		CCNA_01047	0.44	-0.2
1,143,442	+		CCNA_01047	0.44	+0.5
1,143,450	-		CCNA_01047	0.45	+0.4
1,143,450	-		CCNA_01047	0.45	+1.0
1,143,458	-		CCNA_01047	0.45	-0.7
1,143,480	+		CCNA_01047	0.46	+1.4
1,143,490	+		CCNA_01047	0.46	+0.8
1,143,490	+		CCNA_01047	0.46	-0.5
1,143,490	+		CCNA_01047	0.46	+2.0
1,143,513	-		CCNA_01047	0.47	-0.7
1,143,513	-		CCNA_01047	0.47	+0.5
1,143,538	+		CCNA_01047	0.48	-1.4
1,143,541	-		CCNA_01047	0.48	-0.8
1,143,551	+		CCNA_01047	0.48	-0.6
1,143,561	-		CCNA_01047	0.49	-0.7
1,143,577	+		CCNA_01047	0.49	+0.2
1,143,577	+		CCNA_01047	0.49	+1.0
1,143,586	-		CCNA_01047	0.50	-1.5
1,143,609	+		CCNA_01047	0.51	-0.3
1,143,619	+		CCNA_01047	0.51	-0.4
1,143,625	-		CCNA_01047	0.51	-0.8
1,143,627	-		CCNA_01047	0.51	+0.8
1,143,661	-		CCNA_01047	0.53	-1.3
1,143,669	+		CCNA_01047	0.53	-0.4
1,143,677	-		CCNA_01047	0.53	+0.3
1,143,688	-		CCNA_01047	0.54	+1.2
1,143,763	-		CCNA_01047	0.56	-1.5
1,143,770	+		CCNA_01047	0.57	+0.3
1,143,775	+		CCNA_01047	0.57	+0.2
1,143,775	+		CCNA_01047	0.57	-0.5
1,143,783	-		CCNA_01047	0.57	+0.3
1,143,783	-		CCNA_01047	0.57	+1.6
1,143,882	-		CCNA_01047	0.61	+0.1
1,143,885	+		CCNA_01047	0.61	-1.1
1,143,887	+		CCNA_01047	0.61	-1.0
1,143,937	+		CCNA_01047	0.63	-0.0
1,143,937	+		CCNA_01047	0.63	+0.2
1,143,945	-		CCNA_01047	0.63	-1.9
1,143,945	-		CCNA_01047	0.63	-2.0
1,143,945	-		CCNA_01047	0.63	-0.9
1,143,970	+		CCNA_01047	0.64	-0.6
1,143,983	+		CCNA_01047	0.64	-1.0
1,143,983	+		CCNA_01047	0.64	+1.2
1,143,983	+		CCNA_01047	0.64	-1.3
1,143,983	+		CCNA_01047	0.64	+0.6
1,143,991	-		CCNA_01047	0.65	-0.1
1,143,991	-		CCNA_01047	0.65	-1.7
1,144,028	+		CCNA_01047	0.66	-0.1
1,144,038	+		CCNA_01047	0.66	+0.7
1,144,043	-		CCNA_01047	0.67	-0.2
1,144,079	-		CCNA_01047	0.68	+1.4
1,144,082	+		CCNA_01047	0.68	+1.6
1,144,084	+		CCNA_01047	0.68	-2.0
1,144,106	+		CCNA_01047	0.69	-2.0
1,144,106	+		CCNA_01047	0.69	-0.7
1,144,114	-		CCNA_01047	0.69	+0.3
1,144,115	-		CCNA_01047	0.69	+0.5
1,144,187	-		CCNA_01047	0.72	-2.3
1,144,188	+		CCNA_01047	0.72	+0.3
1,144,216	+		CCNA_01047	0.73	+0.5
1,144,218	-		CCNA_01047	0.73	-1.7
1,144,222	+		CCNA_01047	0.73	+0.2
1,144,224	-		CCNA_01047	0.73	+1.0
1,144,224	-		CCNA_01047	0.73	-0.3
1,144,240	+				+4.0
1,144,247	+		CCNA_01047	0.74	-0.3
1,144,285	-		CCNA_01047	0.76	-0.8
1,144,308	+		CCNA_01047	0.76	-0.6
1,144,314	-		CCNA_01047	0.77	+0.1
1,144,330	+		CCNA_01047	0.77	-1.1
1,144,338	+		CCNA_01047	0.77	-0.4
1,144,338	+		CCNA_01047	0.77	+0.2
1,144,338	+		CCNA_01047	0.77	-0.7
1,144,338	+		CCNA_01047	0.77	-0.8
1,144,346	-		CCNA_01047	0.78	+1.2
1,144,346	-		CCNA_01047	0.78	+0.4
1,144,369	-		CCNA_01047	0.79	+1.0
1,144,391	+		CCNA_01047	0.79	-0.3
1,144,391	+		CCNA_01047	0.79	-1.2
1,144,391	+		CCNA_01047	0.79	+0.2
1,144,391	+		CCNA_01047	0.79	+1.0
1,144,399	-		CCNA_01047	0.80	-0.4
1,144,417	+		CCNA_01047	0.80	+1.2
1,144,427	+		CCNA_01047	0.81	-0.8
1,144,432	+		CCNA_01047	0.81	+2.3
1,144,432	+		CCNA_01047	0.81	-1.3
1,144,432	+		CCNA_01047	0.81	-0.2
1,144,440	-		CCNA_01047	0.81	-0.2
1,144,448	-		CCNA_01047	0.82	-0.0
1,144,466	+		CCNA_01047	0.82	-0.1
1,144,466	+		CCNA_01047	0.82	-1.1
1,144,466	+		CCNA_01047	0.82	-0.8
1,144,466	+		CCNA_01047	0.82	-1.2
1,144,466	+		CCNA_01047	0.82	-0.2
1,144,474	-		CCNA_01047	0.82	-1.8
1,144,474	-		CCNA_01047	0.82	+0.6
1,144,474	-		CCNA_01047	0.82	-1.6
1,144,474	-		CCNA_01047	0.82	+0.4
1,144,474	-		CCNA_01047	0.82	+1.2
1,144,474	-		CCNA_01047	0.82	-1.7
1,144,481	-		CCNA_01047	0.83	+0.8
1,144,512	+		CCNA_01047	0.84	-0.8
1,144,534	+		CCNA_01047	0.85	-0.4
1,144,535	+		CCNA_01047	0.85	+1.4
1,144,544	-		CCNA_01047	0.85	+1.0
1,144,545	+		CCNA_01047	0.85	+4.0
1,144,552	+		CCNA_01047	0.85	+1.0
1,144,567	+		CCNA_01047	0.86	-0.5
1,144,601	-				+3.0
1,144,601	-		CCNA_01047	0.87	-1.5
1,144,606	-		CCNA_01047	0.87	-0.4
1,144,608	+		CCNA_01047	0.87	-0.7
1,144,608	-				+1.4
1,144,609	+		CCNA_01047	0.87	-1.2
1,144,616	-		CCNA_01047	0.88	-2.2
1,144,616	-		CCNA_01047	0.88	-2.0
1,144,619	+		CCNA_01047	0.88	-1.8
1,144,626	-		CCNA_01047	0.88	+1.1
1,144,627	+		CCNA_01047	0.88	-0.8
1,144,627	+		CCNA_01047	0.88	+1.6
1,144,628	+		CCNA_01047	0.88	+1.0
1,144,629	-		CCNA_01047	0.88	-1.6
1,144,635	-		CCNA_01047	0.88	-0.2
1,144,641	-		CCNA_01047	0.89	-1.1
1,144,654	-		CCNA_01047	0.89	-1.2
1,144,655	+		CCNA_01047	0.89	-1.1
1,144,721	+				-1.6
1,144,721	+				-0.2
1,144,721	+				+0.8
1,144,729	-				-0.4
1,144,729	-				+1.7
1,144,729	-				+1.2
1,144,740	-				+1.1
1,144,760	+				+0.6
1,144,778	+				-1.5
1,144,778	-				-0.4
1,144,798	+				-0.4
1,144,823	+				-0.6
1,144,841	+				+1.2
1,144,841	+				-0.5
1,144,846	+				+0.1
1,144,852	+				+0.8
1,144,934	+				-2.2
1,144,942	-				-0.8
1,145,071	-				-0.1
1,145,081	-				-0.9
1,145,086	-				-0.6
1,145,086	-				+0.1
1,145,092	-				+1.4
1,145,103	+				-0.7
1,145,111	-				-0.3
1,145,113	-				+0.9
1,145,153	-		CCNA_01048	0.18	+0.4
1,145,157	+		CCNA_01048	0.19	-1.1
1,145,205	+		CCNA_01048	0.38	+0.2
1,145,243	-		CCNA_01048	0.52	+0.5
1,145,243	-		CCNA_01048	0.52	-1.0
1,145,243	-		CCNA_01048	0.52	+2.2
1,145,246	+		CCNA_01048	0.53	-1.0
1,145,273	+		CCNA_01048	0.63	-2.0
1,145,273	+		CCNA_01048	0.63	+1.1
1,145,273	+		CCNA_01048	0.63	-0.5
1,145,273	+		CCNA_01048	0.63	+0.1
1,145,273	+		CCNA_01048	0.63	-0.1
1,145,273	+		CCNA_01048	0.63	+2.0
1,145,273	+		CCNA_01048	0.63	-0.8
1,145,273	+		CCNA_01048	0.63	+0.3
1,145,273	+		CCNA_01048	0.63	-0.2
1,145,281	-		CCNA_01048	0.66	+1.0
1,145,281	-		CCNA_01048	0.66	+0.4
1,145,281	-		CCNA_01048	0.66	+0.4
1,145,281	-		CCNA_01048	0.66	+1.2
1,145,281	-		CCNA_01048	0.66	+0.2
1,145,281	-		CCNA_01048	0.66	+0.5
1,145,281	-		CCNA_01048	0.66	+0.1
1,145,281	-		CCNA_01048	0.66	+1.7
1,145,281	-		CCNA_01048	0.66	+0.7
1,145,281	-		CCNA_01048	0.66	-0.0
1,145,281	-		CCNA_01048	0.66	+0.3
1,145,281	-		CCNA_01048	0.66	+1.3
1,145,281	-		CCNA_01048	0.66	-1.6
1,145,281	-		CCNA_01048	0.66	-0.0
1,145,281	-		CCNA_01048	0.66	+0.8
1,145,281	-		CCNA_01048	0.66	+0.9
1,145,281	-		CCNA_01048	0.66	+0.6
1,145,281	-		CCNA_01048	0.66	+0.1
1,145,283	+		CCNA_01048	0.67	+0.1
1,145,340	-		CCNA_01048	0.89	+2.2
1,145,340	-		CCNA_01048	0.89	-1.1
1,145,340	-		CCNA_01048	0.89	-1.0
1,145,351	-				-0.1
1,145,364	-				-0.6
1,145,371	-				-0.7
1,145,395	-				-0.1
1,145,401	+				+3.0
1,145,411	+				-0.1
1,145,416	+				-0.2
1,145,450	+				-0.6
1,145,506	-		CCNA_03945	0.34	-1.2
1,145,518	-		CCNA_03945	0.42	-0.5
1,145,530	-		CCNA_03945	0.50	-2.4
1,145,547	-		CCNA_03945	0.61	+0.3
1,145,562	+		CCNA_03945	0.71	+0.4
1,145,570	-		CCNA_03945	0.76	-0.7
1,145,589	-		CCNA_03945	0.88	+0.4
1,145,589	-		CCNA_03945	0.88	-1.0
1,145,589	-		CCNA_03945	0.88	-0.4
1,145,612	-				+0.6
1,145,656	+				-0.6
1,145,664	-				-1.2
1,145,664	-				-0.2
1,145,669	-				-1.4
1,145,669	-				-0.3
1,145,674	+				-1.2
1,145,680	+				+2.4
1,145,688	-				-1.0
1,145,713	+				-2.1
1,145,722	-		CCNA_01049	0.10	-1.1
1,145,772	-		CCNA_01049	0.21	+0.0
1,145,809	+		CCNA_01049	0.28	-0.6
1,145,823	+		CCNA_01049	0.31	-0.3
1,145,826	-		CCNA_01049	0.32	+0.0
1,145,827	-		CCNA_01049	0.32	+2.0
1,145,831	-		CCNA_01049	0.33	-0.4
1,145,871	+		CCNA_01049	0.41	-1.0
1,145,871	+		CCNA_01049	0.41	+0.3
1,145,879	-		CCNA_01049	0.43	+1.8
1,145,891	+		CCNA_01049	0.45	-1.7
1,145,909	+		CCNA_01049	0.49	+0.0
1,145,939	+		CCNA_01049	0.55	-1.0
1,145,939	+		CCNA_01049	0.55	-1.4
1,145,939	+		CCNA_01049	0.55	-0.4
1,145,947	-		CCNA_01049	0.57	+0.1