Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00993

Experiment: PYE with Vancomycin 0.007 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Vancomycin 0.007 mg/ml
1,072,726	-				+1.5
1,072,727	-		CCNA_00992	0.10	+0.7
1,072,735	+				+2.4
1,072,737	+		CCNA_00992	0.11	+1.4
1,072,743	-		CCNA_00992	0.12	+1.1
1,072,769	-		CCNA_00992	0.14	+0.8
1,072,773	+		CCNA_00992	0.15	+0.5
1,072,783	+		CCNA_00992	0.16	-1.8
1,072,801	+		CCNA_00992	0.17	+0.6
1,072,824	-		CCNA_00992	0.20	+1.0
1,072,824	-		CCNA_00992	0.20	+0.9
1,072,824	-		CCNA_00992	0.20	-0.4
1,072,824	-		CCNA_00992	0.20	+0.9
1,072,824	-		CCNA_00992	0.20	+1.9
1,072,854	-		CCNA_00992	0.23	+0.8
1,072,885	-		CCNA_00992	0.26	+1.6
1,072,885	-		CCNA_00992	0.26	+0.3
1,072,895	+		CCNA_00992	0.27	+1.2
1,072,903	-		CCNA_00992	0.27	+1.5
1,072,915	-		CCNA_00992	0.29	+2.2
1,072,915	-		CCNA_00992	0.29	+1.5
1,072,964	+		CCNA_00992	0.33	+1.4
1,072,964	+		CCNA_00992	0.33	-0.6
1,072,964	+		CCNA_00992	0.33	+2.0
1,072,964	+		CCNA_00992	0.33	-0.6
1,072,964	+		CCNA_00992	0.33	+0.3
1,072,972	-		CCNA_00992	0.34	+0.8
1,073,036	+		CCNA_00992	0.41	-1.2
1,073,036	+		CCNA_00992	0.41	-0.1
1,073,036	+		CCNA_00992	0.41	+0.2
1,073,044	-		CCNA_00992	0.41	+0.8
1,073,055	+		CCNA_00992	0.42	+1.0
1,073,055	+		CCNA_00992	0.42	-0.3
1,073,055	+		CCNA_00992	0.42	-0.5
1,073,055	+		CCNA_00992	0.42	-1.6
1,073,063	-		CCNA_00992	0.43	+0.7
1,073,063	-		CCNA_00992	0.43	+0.7
1,073,063	-		CCNA_00992	0.43	+1.7
1,073,071	-		CCNA_00992	0.44	-0.7
1,073,078	-		CCNA_00992	0.45	+0.9
1,073,084	-		CCNA_00992	0.45	+0.7
1,073,106	+		CCNA_00992	0.47	-0.9
1,073,126	-		CCNA_00992	0.49	+0.8
1,073,134	+		CCNA_00992	0.50	-1.1
1,073,137	-		CCNA_00992	0.50	+0.2
1,073,137	-		CCNA_00992	0.50	+1.0
1,073,155	-		CCNA_00992	0.52	+0.6
1,073,171	+		CCNA_00992	0.54	-1.7
1,073,171	+		CCNA_00992	0.54	+2.0
1,073,179	-		CCNA_00992	0.55	+0.5
1,073,179	-		CCNA_00992	0.55	+1.7
1,073,179	-		CCNA_00992	0.55	+0.8
1,073,179	-		CCNA_00992	0.55	+1.0
1,073,181	+		CCNA_00992	0.55	-0.5
1,073,203	-		CCNA_00992	0.57	-0.7
1,073,205	+		CCNA_00992	0.57	+0.4
1,073,205	+		CCNA_00992	0.57	-0.4
1,073,205	+		CCNA_00992	0.57	+0.2
1,073,208	-		CCNA_00992	0.57	+1.1
1,073,213	+		CCNA_00992	0.58	+1.0
1,073,213	-		CCNA_00992	0.58	+0.8
1,073,213	-				+3.0
1,073,213	-		CCNA_00992	0.58	+1.5
1,073,221	-		CCNA_00992	0.59	+1.3
1,073,221	-		CCNA_00992	0.59	+0.7
1,073,221	-		CCNA_00992	0.59	+0.9
1,073,251	-		CCNA_00992	0.62	+0.4
1,073,259	+		CCNA_00992	0.63	+0.5
1,073,262	-		CCNA_00992	0.63	+1.4
1,073,267	-		CCNA_00992	0.63	+0.6
1,073,347	-		CCNA_00992	0.71	+0.5
1,073,377	-		CCNA_00992	0.74	+0.2
1,073,407	-		CCNA_00992	0.77	+1.1
1,073,454	+		CCNA_00992	0.82	-0.8
1,073,498	-		CCNA_00992	0.86	+0.3
1,073,521	-		CCNA_00992	0.88	+0.7
1,073,521	-		CCNA_00992	0.88	+1.0
1,073,523	-		CCNA_00992	0.89	+0.4
1,073,561	+				-0.7
1,073,561	+				+0.2
1,073,561	+				-0.9
1,073,561	+				-0.2
1,073,569	-				-0.2
1,073,569	-				+1.2
1,073,579	-				+0.5
1,073,579	-				+0.4
1,073,581	+				-1.0
1,073,624	+				+0.1
1,073,627	+				+2.1
1,073,707	+				+0.4
1,073,723	+				+1.4
1,073,755	-				+0.6
1,073,760	-				-1.7
1,073,760	-				+0.4
1,073,760	-				-1.8
1,073,833	+				+0.3
1,073,841	-				-0.1
1,073,848	+				-1.0
1,073,848	+				+0.8
1,073,856	-				-0.4
1,073,856	-				-2.5
1,073,865	-		CCNA_00993	0.10	-0.4
1,073,898	-		CCNA_00993	0.12	-1.2
1,073,915	+		CCNA_00993	0.13	-1.1
1,073,935	+		CCNA_00993	0.15	-0.2
1,073,943	-		CCNA_00993	0.15	-0.5
1,073,972	+		CCNA_00993	0.17	+0.5
1,073,972	+		CCNA_00993	0.17	-0.4
1,073,973	+		CCNA_00993	0.17	-1.6
1,073,973	+		CCNA_00993	0.17	-0.4
1,073,973	+		CCNA_00993	0.17	-1.3
1,073,973	+		CCNA_00993	0.17	-0.4
1,073,980	-		CCNA_00993	0.18	-0.6
1,073,980	-		CCNA_00993	0.18	-0.4
1,073,980	-		CCNA_00993	0.18	-0.0
1,073,981	-		CCNA_00993	0.18	-1.4
1,073,981	-		CCNA_00993	0.18	-1.5
1,073,981	-		CCNA_00993	0.18	-0.2
1,074,019	-		CCNA_00993	0.20	-1.8
1,074,059	+		CCNA_00993	0.23	-0.6
1,074,081	+		CCNA_00993	0.24	-1.9
1,074,086	+		CCNA_00993	0.24	-1.4
1,074,093	-		CCNA_00993	0.25	+0.1
1,074,094	-		CCNA_00993	0.25	+1.6
1,074,108	-		CCNA_00993	0.26	-1.7
1,074,140	+		CCNA_00993	0.28	-0.1
1,074,152	+		CCNA_00993	0.29	+1.1
1,074,168	-		CCNA_00993	0.30	-0.2
1,074,231	+		CCNA_00993	0.34	+0.0
1,074,236	+		CCNA_00993	0.34	-1.4
1,074,238	+		CCNA_00993	0.34	+1.6
1,074,246	-		CCNA_00993	0.35	-2.5
1,074,259	+		CCNA_00993	0.36	-1.0
1,074,263	-		CCNA_00993	0.36	-0.4
1,074,264	+		CCNA_00993	0.36	+0.5
1,074,272	+		CCNA_00993	0.37	+1.6
1,074,373	+		CCNA_00993	0.43	+0.1
1,074,390	+		CCNA_00993	0.44	+1.1
1,074,392	+		CCNA_00993	0.44	-0.8
1,074,395	+		CCNA_00993	0.45	-0.7
1,074,398	-		CCNA_00993	0.45	+0.4
1,074,458	+		CCNA_00993	0.49	-2.0
1,074,466	-		CCNA_00993	0.49	-1.0
1,074,468	+		CCNA_00993	0.49	+1.4
1,074,494	+		CCNA_00993	0.51	+0.4
1,074,494	+		CCNA_00993	0.51	-1.0
1,074,497	-		CCNA_00993	0.51	-0.7
1,074,515	+		CCNA_00993	0.52	-0.2
1,074,515	+		CCNA_00993	0.52	+0.3
1,074,515	+		CCNA_00993	0.52	-2.2
1,074,517	-		CCNA_00993	0.52	+0.0
1,074,523	-		CCNA_00993	0.53	+0.1
1,074,523	-		CCNA_00993	0.53	+1.4
1,074,523	-		CCNA_00993	0.53	+1.4
1,074,530	+		CCNA_00993	0.53	+0.6
1,074,530	+		CCNA_00993	0.53	+0.5
1,074,530	+		CCNA_00993	0.53	-0.0
1,074,532	-		CCNA_00993	0.53	+0.4
1,074,548	-		CCNA_00993	0.54	-1.1
1,074,599	+		CCNA_00993	0.58	+0.0
1,074,599	+		CCNA_00993	0.58	-1.4
1,074,599	+		CCNA_00993	0.58	+0.3
1,074,599	+		CCNA_00993	0.58	+1.6
1,074,599	+		CCNA_00993	0.58	+1.0
1,074,599	+		CCNA_00993	0.58	+0.0
1,074,607	-		CCNA_00993	0.58	-0.4
1,074,607	-		CCNA_00993	0.58	-0.1
1,074,607	-		CCNA_00993	0.58	-0.3
1,074,610	+		CCNA_00993	0.58	+0.6
1,074,610	+		CCNA_00993	0.58	-0.2
1,074,623	+		CCNA_00993	0.59	-1.5
1,074,623	+		CCNA_00993	0.59	+0.3
1,074,631	-		CCNA_00993	0.60	-0.9
1,074,648	+		CCNA_00993	0.61	-0.7
1,074,656	-		CCNA_00993	0.61	-1.6
1,074,678	+		CCNA_00993	0.63	-1.0
1,074,689	+		CCNA_00993	0.64	-1.1
1,074,691	+		CCNA_00993	0.64	+0.0
1,074,691	+		CCNA_00993	0.64	-1.0
1,074,701	+		CCNA_00993	0.64	-0.9
1,074,709	-		CCNA_00993	0.65	-1.4
1,074,709	-		CCNA_00993	0.65	+0.4
1,074,737	+		CCNA_00993	0.67	-1.8
1,074,746	+		CCNA_00993	0.67	+0.6
1,074,747	+		CCNA_00993	0.67	+1.1
1,074,755	-		CCNA_00993	0.68	+0.1
1,074,778	+		CCNA_00993	0.69	-0.0
1,074,829	+		CCNA_00993	0.73	-0.4
1,074,875	+		CCNA_00993	0.76	+1.0
1,074,883	-		CCNA_00993	0.76	+0.4
1,074,930	-		CCNA_00993	0.79	+1.6
1,074,954	+		CCNA_00993	0.81	-0.5
1,074,954	-		CCNA_00993	0.81	+0.4
1,074,954	-		CCNA_00993	0.81	+0.8
1,074,962	+		CCNA_00993	0.81	+0.7
1,074,962	-		CCNA_00993	0.81	-0.9
1,074,967	+		CCNA_00993	0.82	-1.9
1,074,967	+		CCNA_00993	0.82	+0.8
1,074,975	+		CCNA_00993	0.82	-0.1
1,074,975	-		CCNA_00993	0.82	-0.9
1,074,983	-		CCNA_00993	0.83	-0.7
1,074,986	+		CCNA_00993	0.83	-0.3
1,074,995	-		CCNA_00993	0.83	-0.5
1,075,030	-		CCNA_00993	0.86	-2.2
1,075,032	-		CCNA_00993	0.86	-0.5
1,075,041	+		CCNA_00993	0.86	-1.0
1,075,098	-				-0.0
1,075,107	+				-0.6
1,075,126	+				-1.4
1,075,134	-				-1.0
1,075,134	-				+0.3
1,075,134	-				+2.0
1,075,134	-				-1.0
1,075,134	-				+0.0
1,075,179	-				-2.0
1,075,190	-				-0.7
1,075,201	-				+1.0
1,075,217	+				+2.1
1,075,217	+				+1.3
1,075,217	+				+0.5
1,075,217	+				+0.6
1,075,218	-				+1.6
1,075,235	+				+0.2
1,075,243	-				+0.5
1,075,296	-				-0.3
1,075,324	+				+1.1
1,075,361	+				-0.6
1,075,373	+				-0.7
1,075,373	+				+0.1
1,075,381	-				-2.6
1,075,499	+				-0.7
1,075,499	+				+1.1
1,075,504	+				-0.2
1,075,504	+				-0.7
1,075,567	-				+1.1
1,075,590	+		CCNA_00994	0.11	+0.1
1,075,598	-		CCNA_00994	0.11	-1.8
1,075,605	-		CCNA_00994	0.12	-1.1
1,075,614	+		CCNA_00994	0.12	+0.6
1,075,622	-		CCNA_00994	0.13	+0.1
1,075,624	-		CCNA_00994	0.13	+1.0
1,075,624	-		CCNA_00994	0.13	+1.5
1,075,649	+		CCNA_00994	0.14	+0.0
1,075,649	+		CCNA_00994	0.14	-1.3
1,075,655	-		CCNA_00994	0.15	-0.0
1,075,657	-		CCNA_00994	0.15	-1.4
1,075,658	-		CCNA_00994	0.15	+0.0
1,075,683	-		CCNA_00994	0.16	-1.0
1,075,683	-		CCNA_00994	0.16	+0.5
1,075,694	-		CCNA_00994	0.17	-1.6
1,075,748	+		CCNA_00994	0.20	-0.6
1,075,756	-		CCNA_00994	0.21	+0.8
1,075,756	-		CCNA_00994	0.21	-0.2
1,075,767	+		CCNA_00994	0.21	+0.8
1,075,788	+		CCNA_00994	0.23	-1.9
1,075,796	-		CCNA_00994	0.23	-0.3
1,075,796	-		CCNA_00994	0.23	+1.4
1,075,796	-		CCNA_00994	0.23	-1.7
1,075,796	-		CCNA_00994	0.23	-0.6
1,075,844	+		CCNA_00994	0.26	+0.4
1,075,854	+		CCNA_00994	0.27	+0.1
1,075,895	-		CCNA_00994	0.29	-2.0
1,075,910	-		CCNA_00994	0.30	-1.2
1,075,933	+		CCNA_00994	0.31	-0.9
1,075,937	+		CCNA_00994	0.32	+0.0
1,075,991	+		CCNA_00994	0.35	-0.5
1,076,026	+		CCNA_00994	0.37	+0.3
1,076,036	+				+1.6
1,076,094	+		CCNA_00994	0.41	-0.3
1,076,102	-		CCNA_00994	0.42	+2.0
1,076,102	-		CCNA_00994	0.42	+1.2
1,076,119	-		CCNA_00994	0.43	-0.6
1,076,121	+		CCNA_00994	0.43	+0.0
1,076,129	-		CCNA_00994	0.43	-0.6
1,076,129	-		CCNA_00994	0.43	+0.6
1,076,129	-		CCNA_00994	0.43	-0.6
1,076,129	-		CCNA_00994	0.43	+0.0
1,076,154	+		CCNA_00994	0.45	+0.3
1,076,154	+		CCNA_00994	0.45	-0.0
1,076,176	+		CCNA_00994	0.46	-2.0
1,076,203	-		CCNA_00994	0.48	+2.7
1,076,242	+		CCNA_00994	0.50	-0.2
1,076,244	+		CCNA_00994	0.50	-0.7