Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00986

Experiment: PYE with Vancomycin 0.007 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Vancomycin 0.007 mg/ml
1,065,829	-		CCNA_00985	0.56	-0.8
1,065,843	+		CCNA_00985	0.56	+4.0
1,065,851	-		CCNA_00985	0.57	-0.4
1,065,861	-		CCNA_00985	0.57	+2.7
1,065,863	+		CCNA_00985	0.57	+2.4
1,065,863	+		CCNA_00985	0.57	+1.1
1,065,863	+		CCNA_00985	0.57	-2.1
1,065,863	+		CCNA_00985	0.57	+1.0
1,065,871	-		CCNA_00985	0.58	+1.5
1,065,871	-		CCNA_00985	0.58	+1.1
1,065,871	-		CCNA_00985	0.58	-1.0
1,065,871	-		CCNA_00985	0.58	-1.7
1,065,898	+		CCNA_00985	0.59	-1.6
1,066,007	-		CCNA_00985	0.64	-0.5
1,066,013	-		CCNA_00985	0.64	-1.1
1,066,019	+		CCNA_00985	0.64	-1.9
1,066,021	+		CCNA_00985	0.64	-0.6
1,066,021	+		CCNA_00985	0.64	+1.0
1,066,026	+		CCNA_00985	0.65	+0.1
1,066,029	-		CCNA_00985	0.65	+0.2
1,066,029	-		CCNA_00985	0.65	+0.4
1,066,029	-		CCNA_00985	0.65	+2.6
1,066,029	-		CCNA_00985	0.65	-0.6
1,066,029	-		CCNA_00985	0.65	-0.4
1,066,034	-		CCNA_00985	0.65	-2.0
1,066,051	+		CCNA_00985	0.66	-0.6
1,066,051	+		CCNA_00985	0.66	-0.4
1,066,059	-		CCNA_00985	0.66	+3.0
1,066,086	+		CCNA_00985	0.67	-0.7
1,066,113	-		CCNA_00985	0.69	+0.6
1,066,113	-		CCNA_00985	0.69	-1.3
1,066,135	+		CCNA_00985	0.70	+0.9
1,066,143	-		CCNA_00985	0.70	-1.0
1,066,158	+		CCNA_00985	0.71	+0.6
1,066,158	+		CCNA_00985	0.71	-0.2
1,066,158	+		CCNA_00985	0.71	-1.9
1,066,161	-		CCNA_00985	0.71	+0.4
1,066,166	-		CCNA_00985	0.71	+0.4
1,066,166	-		CCNA_00985	0.71	-1.0
1,066,166	-		CCNA_00985	0.71	+1.0
1,066,173	+		CCNA_00985	0.71	-0.0
1,066,173	+		CCNA_00985	0.71	+1.6
1,066,194	+		CCNA_00985	0.72	-1.4
1,066,194	+		CCNA_00985	0.72	-0.7
1,066,205	-		CCNA_00985	0.73	+0.8
1,066,217	+		CCNA_00985	0.73	-1.1
1,066,222	-		CCNA_00985	0.74	-0.2
1,066,227	-		CCNA_00985	0.74	+0.4
1,066,232	-		CCNA_00985	0.74	-1.8
1,066,245	+		CCNA_00985	0.75	+0.0
1,066,245	+		CCNA_00985	0.75	+0.8
1,066,253	+		CCNA_00985	0.75	-1.3
1,066,253	+		CCNA_00985	0.75	+1.0
1,066,253	+		CCNA_00985	0.75	-0.2
1,066,253	-		CCNA_00985	0.75	-0.7
1,066,253	-		CCNA_00985	0.75	+0.4
1,066,261	-		CCNA_00985	0.75	+0.1
1,066,261	-		CCNA_00985	0.75	-0.4
1,066,273	-		CCNA_00985	0.76	-0.3
1,066,297	+		CCNA_00985	0.77	+1.3
1,066,304	-		CCNA_00985	0.77	+0.0
1,066,305	-		CCNA_00985	0.77	-0.9
1,066,321	+		CCNA_00985	0.78	-0.8
1,066,345	-		CCNA_00985	0.79	-0.8
1,066,365	+		CCNA_00985	0.80	+1.0
1,066,380	-		CCNA_00985	0.81	+1.0
1,066,400	+		CCNA_00985	0.82	-0.6
1,066,449	-		CCNA_00985	0.84	-0.9
1,066,454	-		CCNA_00985	0.84	-0.3
1,066,462	+		CCNA_00985	0.84	-2.4
1,066,516	+		CCNA_00985	0.87	-1.2
1,066,522	+		CCNA_00985	0.87	-0.9
1,066,522	+		CCNA_00985	0.87	+0.0
1,066,524	-		CCNA_00985	0.87	-0.4
1,066,524	-		CCNA_00985	0.87	+0.1
1,066,530	-		CCNA_00985	0.88	+2.1
1,066,530	-		CCNA_00985	0.88	-0.1
1,066,530	-		CCNA_00985	0.88	+1.3
1,066,530	-		CCNA_00985	0.88	-0.3
1,066,539	+		CCNA_00985	0.88	-2.0
1,066,561	+		CCNA_00985	0.89	+1.7
1,066,561	+		CCNA_00985	0.89	+0.2
1,066,566	+		CCNA_00985	0.89	-0.0
1,066,569	-		CCNA_00985	0.89	-1.8
1,066,571	+		CCNA_00985	0.89	+0.5
1,066,571	+		CCNA_00985	0.89	+0.7
1,066,574	-				+4.0
1,066,576	+		CCNA_00985	0.90	-1.4
1,066,579	-		CCNA_00985	0.90	-0.4
1,066,581	+		CCNA_00985	0.90	-1.0
1,066,589	-				-0.8
1,066,602	+				+0.5
1,066,704	+				-1.3
1,066,710	+				-3.6
1,066,711	+				-1.7
1,066,732	+				-2.8
1,066,740	-				-0.6
1,066,750	-				-0.7
1,066,820	+				+1.4
1,066,820	+				+0.1
1,066,820	+				-1.1
1,066,820	+				-0.2
1,066,820	-				-1.0
1,066,828	-				+3.0
1,066,828	-				-1.3
1,066,861	+				-1.0
1,066,876	+				-0.8
1,066,884	-				-1.0
1,066,949	-		CCNA_00986	0.13	-0.8
1,066,956	-		CCNA_00986	0.14	+0.6
1,066,958	+		CCNA_00986	0.14	-0.0
1,066,958	+		CCNA_00986	0.14	-2.4
1,066,958	+		CCNA_00986	0.14	-0.7
1,066,963	+		CCNA_00986	0.15	+0.4
1,066,963	+		CCNA_00986	0.15	-0.2
1,066,966	-		CCNA_00986	0.15	+0.1
1,066,971	-		CCNA_00986	0.15	+0.0
1,066,971	-		CCNA_00986	0.15	-1.6
1,066,989	-		CCNA_00986	0.17	-1.4
1,067,014	+		CCNA_00986	0.20	-0.5
1,067,041	+		CCNA_00986	0.23	-1.1
1,067,069	+		CCNA_00986	0.26	+1.1
1,067,077	-		CCNA_00986	0.26	+1.1
1,067,084	+		CCNA_00986	0.27	-0.9
1,067,092	-		CCNA_00986	0.28	-0.1
1,067,115	-		CCNA_00986	0.30	-1.0
1,067,127	+		CCNA_00986	0.32	-1.6
1,067,174	+		CCNA_00986	0.37	-0.5
1,067,182	-		CCNA_00986	0.37	+1.4
1,067,216	-		CCNA_00986	0.41	+0.5
1,067,224	-		CCNA_00986	0.42	+0.0
1,067,224	-		CCNA_00986	0.42	-1.6
1,067,296	+		CCNA_00986	0.49	+0.4
1,067,296	+		CCNA_00986	0.49	-1.0
1,067,303	+		CCNA_00986	0.50	-2.4
1,067,392	+		CCNA_00986	0.59	-1.1
1,067,471	+		CCNA_00986	0.68	-0.7
1,067,485	+		CCNA_00986	0.69	-1.7
1,067,514	-		CCNA_00986	0.72	-0.7
1,067,558	+		CCNA_00986	0.77	-0.1
1,067,568	+		CCNA_00986	0.78	-2.4
1,067,571	-		CCNA_00986	0.78	-1.0
1,067,598	-		CCNA_00986	0.81	+0.4
1,067,698	+				-0.0
1,067,698	+				-0.2
1,067,698	+				-1.5
1,067,706	-				-0.8
1,067,753	-				+1.4
1,067,764	+				-1.4
1,067,799	-				-1.4
1,067,819	+				+0.6
1,067,827	-				+1.8
1,067,830	-				-0.6
1,067,843	-				-1.4
1,067,847	-				-2.6
1,067,871	-		CCNA_00987	0.14	-0.6
1,067,878	+		CCNA_00987	0.17	+0.0
1,067,885	+		CCNA_00987	0.21	-1.0
1,067,893	-		CCNA_00987	0.25	-0.0
1,067,917	+		CCNA_00987	0.36	+0.2
1,067,918	+		CCNA_00987	0.37	+1.2
1,067,928	+		CCNA_00987	0.42	-0.8
1,067,935	+		CCNA_00987	0.45	-0.4
1,067,941	+		CCNA_00987	0.48	-0.6
1,067,943	-		CCNA_00987	0.49	-0.6
1,067,954	+		CCNA_00987	0.54	+2.6
1,067,954	+		CCNA_00987	0.54	+0.7
1,067,954	+		CCNA_00987	0.54	+1.3
1,067,962	+		CCNA_00987	0.58	+1.7
1,067,962	+		CCNA_00987	0.58	+1.0
1,067,962	-		CCNA_00987	0.58	-0.6
1,067,970	-		CCNA_00987	0.62	-1.0
1,067,970	-		CCNA_00987	0.62	-0.7
1,067,975	+		CCNA_00987	0.65	-0.4
1,067,980	+		CCNA_00987	0.67	-1.2
1,067,980	+		CCNA_00987	0.67	+0.9
1,067,996	+		CCNA_00987	0.75	+0.8
1,067,996	+		CCNA_00987	0.75	+0.8
1,068,001	+		CCNA_00987	0.77	-0.4
1,068,004	-		CCNA_00987	0.79	-0.6
1,068,004	-		CCNA_00987	0.79	-0.6
1,068,033	+				-0.8
1,068,034	+				-1.0
1,068,090	-				+2.2
1,068,125	+				+1.4
1,068,130	+				+1.0
1,068,146	-				+0.2
1,068,147	-				+1.7
1,068,156	+				-0.0
1,068,158	+				-0.7
1,068,158	+				+1.5
1,068,158	+				-0.5
1,068,158	+				-0.6
1,068,158	+				+3.5
1,068,158	+				-0.7
1,068,160	-				-0.5
1,068,163	+				+0.3
1,068,166	-				-0.9
1,068,166	-				-1.6
1,068,166	-				+0.7
1,068,166	-				-0.4
1,068,166	-				+0.2
1,068,166	-				+0.3
1,068,196	-				-2.2
1,068,206	-				-0.2
1,068,217	+				-0.5
1,068,280	+		CCNA_00988	0.11	-0.2
1,068,288	-		CCNA_00988	0.11	-1.1
1,068,311	-		CCNA_00988	0.13	-1.6
1,068,324	+		CCNA_00988	0.14	+1.6
1,068,325	-		CCNA_00988	0.14	-0.2
1,068,342	-		CCNA_00988	0.15	-1.0
1,068,425	-		CCNA_00988	0.21	+1.0
1,068,425	-		CCNA_00988	0.21	-1.0
1,068,490	+		CCNA_00988	0.25	+0.4
1,068,523	-		CCNA_00988	0.27	-0.8
1,068,620	+		CCNA_00988	0.34	-0.0
1,068,620	+		CCNA_00988	0.34	+2.0
1,068,628	-		CCNA_00988	0.35	-0.0
1,068,638	-		CCNA_00988	0.35	-1.9
1,068,651	-		CCNA_00988	0.36	-2.5
1,068,651	-		CCNA_00988	0.36	-0.2
1,068,659	-		CCNA_00988	0.37	-0.2
1,068,727	-		CCNA_00988	0.42	-2.0