Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00924

Experiment: PYE with Vancomycin 0.007 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Vancomycin 0.007 mg/ml
1,000,771	+		CCNA_00922	0.84	-0.0
1,000,773	+		CCNA_00922	0.84	+3.0
1,000,790	+		CCNA_00922	0.85	+0.2
1,000,822	-		CCNA_00922	0.86	-1.6
1,000,867	+		CCNA_00922	0.88	-0.0
1,000,877	+		CCNA_00922	0.88	+0.7
1,000,877	+		CCNA_00922	0.88	+1.1
1,000,885	-		CCNA_00922	0.89	-0.7
1,000,927	-				+0.4
1,000,929	-				-1.1
1,000,951	-				-1.2
1,000,965	+				+0.2
1,000,973	-				-0.6
1,000,973	-				-0.5
1,000,973	-				-2.7
1,000,979	-				+0.6
1,000,994	-				+0.4
1,000,994	-				-2.0
1,000,994	-				+1.7
1,001,010	+				+0.1
1,001,019	-				+1.1
1,001,037	+				+0.5
1,001,045	-				+1.0
1,001,047	-				-1.1
1,001,064	-				-0.5
1,001,125	+				+1.2
1,001,174	+				+1.2
1,001,208	+				+0.8
1,001,208	+				+0.5
1,001,211	-				+0.3
1,001,216	-				-0.9
1,001,216	-				-1.8
1,001,216	-				-0.1
1,001,241	+				+1.1
1,001,243	+				+0.4
1,001,243	+				+0.8
1,001,243	-				-0.8
1,001,251	-				+1.2
1,001,251	-				-1.9
1,001,271	-				-2.1
1,001,288	-				+0.1
1,001,314	-				+0.5
1,001,380	-				-2.4
1,001,407	+				-1.2
1,001,458	-		CCNA_00923	0.18	+0.7
1,001,488	+		CCNA_00923	0.27	+0.8
1,001,488	+		CCNA_00923	0.27	+0.4
1,001,496	-		CCNA_00923	0.30	-0.9
1,001,516	+		CCNA_00923	0.36	-0.7
1,001,518	-		CCNA_00923	0.36	+0.6
1,001,531	+		CCNA_00923	0.40	-0.5
1,001,531	+		CCNA_00923	0.40	+0.4
1,001,531	+		CCNA_00923	0.40	-1.4
1,001,531	+		CCNA_00923	0.40	+0.4
1,001,531	+		CCNA_00923	0.40	+0.9
1,001,531	+		CCNA_00923	0.40	-0.7
1,001,536	+		CCNA_00923	0.42	+0.6
1,001,539	-		CCNA_00923	0.43	-0.6
1,001,539	-		CCNA_00923	0.43	+0.5
1,001,539	-		CCNA_00923	0.43	-0.9
1,001,539	-		CCNA_00923	0.43	+0.6
1,001,539	-		CCNA_00923	0.43	+0.8
1,001,539	-		CCNA_00923	0.43	-0.5
1,001,539	-		CCNA_00923	0.43	-0.0
1,001,588	+		CCNA_00923	0.57	+1.0
1,001,588	+		CCNA_00923	0.57	-0.6
1,001,596	-		CCNA_00923	0.60	-1.1
1,001,611	-		CCNA_00923	0.64	+1.0
1,001,676	-		CCNA_00923	0.84	-1.2
1,001,676	-		CCNA_00923	0.84	-0.6
1,001,676	-		CCNA_00923	0.84	-1.1
1,001,684	-		CCNA_00923	0.86	-0.7
1,001,710	-				-0.3
1,001,732	-				-0.8
1,001,732	-				+2.8
1,001,737	+				-0.5
1,001,743	+				-1.2
1,001,745	-				-0.5
1,001,751	-				-0.1
1,001,751	-				+1.2
1,001,757	+				-0.3
1,001,764	-				+0.2
1,001,787	-		CCNA_00924	0.17	-0.8
1,001,850	-		CCNA_00924	0.40	-1.7
1,001,874	-		CCNA_00924	0.48	-0.9
1,001,885	-		CCNA_00924	0.52	-2.4
1,001,885	-		CCNA_00924	0.52	-2.9
1,002,026	+				+0.9
1,002,061	+				+0.2
1,002,083	+		CCNA_00925	0.12	-3.2
1,002,085	-		CCNA_00925	0.12	-1.0
1,002,113	-		CCNA_00925	0.17	-0.5
1,002,128	+		CCNA_00925	0.20	-0.4
1,002,129	+		CCNA_00925	0.20	-0.8
1,002,137	-		CCNA_00925	0.22	-0.4
1,002,142	-		CCNA_00925	0.23	+0.9
1,002,148	-		CCNA_00925	0.24	+1.8
1,002,163	+		CCNA_00925	0.27	-1.5
1,002,214	-		CCNA_00925	0.36	-0.8
1,002,214	-		CCNA_00925	0.36	+1.5
1,002,272	-		CCNA_00925	0.47	+1.7
1,002,322	-		CCNA_00925	0.56	+0.9
1,002,375	-		CCNA_00925	0.66	-0.2
1,002,388	+		CCNA_00925	0.68	-0.1
1,002,391	-		CCNA_00925	0.69	+0.7
1,002,423	-		CCNA_00925	0.75	+1.6
1,002,442	+		CCNA_00925	0.78	+0.4
1,002,450	-		CCNA_00925	0.80	+0.1
1,002,450	-		CCNA_00925	0.80	+0.1
1,002,452	+		CCNA_00925	0.80	+1.0
1,002,484	+		CCNA_00925	0.86	-1.0
1,002,484	+		CCNA_00925	0.86	-0.9
1,002,484	+		CCNA_00925	0.86	+1.8
1,002,484	+		CCNA_00925	0.86	-1.0
1,002,492	-		CCNA_00925	0.87	-0.1
1,002,492	-		CCNA_00925	0.87	+0.4
1,002,492	-		CCNA_00925	0.87	+0.8
1,002,492	-		CCNA_00925	0.87	+1.1
1,002,492	-		CCNA_00925	0.87	+0.4
1,002,520	-				+0.4
1,002,542	+				-1.3
1,002,542	+				+1.6
1,002,547	+				-2.0
1,002,550	-				+0.9
1,002,550	-				+0.8
1,002,550	-				+1.2
1,002,550	-				+0.0
1,002,550	-				+1.3
1,002,552	+				-0.4
1,002,565	-				-0.3
1,002,579	+				+0.9
1,002,579	+				-0.4
1,002,587	-				-1.6
1,002,635	+				-0.8
1,002,643	+				+0.1
1,002,643	+				-1.1
1,002,643	-				-0.0
1,002,643	-				-2.5
1,002,653	+				-2.0
1,002,655	+				-0.6
1,002,655	+				-0.5
1,002,655	+				-1.6
1,002,655	+				-0.0
1,002,661	-				-1.3
1,002,661	-				-1.4
1,002,663	-				-0.1
1,002,663	-				-0.9
1,002,663	-				-0.5
1,002,663	-				+0.7
1,002,700	+				-0.3
1,002,700	+				+0.5
1,002,700	+				+2.7
1,002,707	-				-0.6
1,002,707	-				+0.2
1,002,734	+				-0.5
1,002,742	-				-1.0
1,002,768	-		CCNA_00926	0.11	+1.1
1,002,788	-		CCNA_00926	0.13	+0.0
1,002,790	-		CCNA_00926	0.13	+0.7
1,002,849	+		CCNA_00926	0.19	-1.0
1,002,854	+		CCNA_00926	0.19	+0.0
1,002,855	+		CCNA_00926	0.20	+1.0
1,002,862	-		CCNA_00926	0.20	-0.8
1,002,872	+		CCNA_00926	0.21	-0.5
1,002,995	+		CCNA_00926	0.34	+0.9
1,003,000	+		CCNA_00926	0.34	+0.2
1,003,001	-		CCNA_00926	0.35	-0.6
1,003,003	-		CCNA_00926	0.35	-1.2
1,003,007	+		CCNA_00926	0.35	+0.3
1,003,007	+		CCNA_00926	0.35	+0.9
1,003,013	-		CCNA_00926	0.36	+1.2