Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00861

Experiment: PYE with Vancomycin 0.007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00859 and CCNA_00860 are separated by 55 nucleotidesCCNA_00860 and CCNA_00861 are separated by 123 nucleotidesCCNA_00861 and CCNA_00862 are separated by 138 nucleotides CCNA_00859: CCNA_00859 - acetyltransferase, GNAT family, at 937,676 to 938,563 _00859 CCNA_00860: CCNA_00860 - holdfast inhibitor protein HfiA, at 938,619 to 938,855 _00860 CCNA_00861: CCNA_00861 - hypothetical protein, at 938,979 to 939,557 _00861 CCNA_00862: CCNA_00862 - Xylonate dehydratase (EC 4.2.1.82) (from data), at 939,696 to 941,471 _00862 Position (kb) 938 939 940Strain fitness (log2 ratio) -2 -1 0 1 2 3at 938.009 kb on + strand, within CCNA_00859at 938.047 kb on + strand, within CCNA_00859at 938.053 kb on - strand, within CCNA_00859at 938.055 kb on - strand, within CCNA_00859at 938.089 kb on + strand, within CCNA_00859at 938.115 kb on + strand, within CCNA_00859at 938.123 kb on - strand, within CCNA_00859at 938.192 kb on + strand, within CCNA_00859at 938.197 kb on + strand, within CCNA_00859at 938.197 kb on + strand, within CCNA_00859at 938.200 kb on - strand, within CCNA_00859at 938.220 kb on + strand, within CCNA_00859at 938.264 kb on + strand, within CCNA_00859at 938.264 kb on + strand, within CCNA_00859at 938.264 kb on + strand, within CCNA_00859at 938.264 kb on + strand, within CCNA_00859at 938.272 kb on - strand, within CCNA_00859at 938.272 kb on - strand, within CCNA_00859at 938.272 kb on - strand, within CCNA_00859at 938.287 kb on - strand, within CCNA_00859at 938.294 kb on + strand, within CCNA_00859at 938.301 kb on + strand, within CCNA_00859at 938.301 kb on - strand, within CCNA_00859at 938.309 kb on - strand, within CCNA_00859at 938.311 kb on + strand, within CCNA_00859at 938.330 kb on + strand, within CCNA_00859at 938.330 kb on + strand, within CCNA_00859at 938.340 kb on + strand, within CCNA_00859at 938.345 kb on - strand, within CCNA_00859at 938.348 kb on - strand, within CCNA_00859at 938.348 kb on - strand, within CCNA_00859at 938.355 kb on - strand, within CCNA_00859at 938.377 kb on - strand, within CCNA_00859at 938.402 kb on + strand, within CCNA_00859at 938.404 kb on + strand, within CCNA_00859at 938.410 kb on - strand, within CCNA_00859at 938.416 kb on - strand, within CCNA_00859at 938.427 kb on + strand, within CCNA_00859at 938.428 kb on - strand, within CCNA_00859at 938.435 kb on - strand, within CCNA_00859at 938.435 kb on - strand, within CCNA_00859at 938.435 kb on - strand, within CCNA_00859at 938.435 kb on - strand, within CCNA_00859at 938.451 kb on + strand, within CCNA_00859at 938.507 kb on - strandat 938.508 kb on - strandat 938.524 kb on + strandat 938.524 kb on + strandat 938.524 kb on + strandat 938.524 kb on + strandat 938.524 kb on + strandat 938.532 kb on - strandat 938.532 kb on - strandat 938.532 kb on - strandat 938.532 kb on - strandat 938.569 kb on - strandat 938.615 kb on + strandat 938.623 kb on - strandat 938.696 kb on - strand, within CCNA_00860at 938.712 kb on + strand, within CCNA_00860at 938.738 kb on + strand, within CCNA_00860at 938.752 kb on - strand, within CCNA_00860at 938.757 kb on - strand, within CCNA_00860at 938.848 kb on + strandat 938.928 kb on + strandat 938.948 kb on + strandat 938.948 kb on + strandat 938.956 kb on - strandat 938.958 kb on + strandat 938.984 kb on - strandat 938.984 kb on - strandat 938.993 kb on - strandat 938.996 kb on + strandat 939.006 kb on + strandat 939.006 kb on + strandat 939.032 kb on - strandat 939.075 kb on + strand, within CCNA_00861at 939.083 kb on - strand, within CCNA_00861at 939.110 kb on + strand, within CCNA_00861at 939.118 kb on - strand, within CCNA_00861at 939.124 kb on + strand, within CCNA_00861at 939.124 kb on + strand, within CCNA_00861at 939.124 kb on + strand, within CCNA_00861at 939.124 kb on + strand, within CCNA_00861at 939.132 kb on - strand, within CCNA_00861at 939.132 kb on - strand, within CCNA_00861at 939.132 kb on - strand, within CCNA_00861at 939.171 kb on + strand, within CCNA_00861at 939.171 kb on + strandat 939.204 kb on + strand, within CCNA_00861at 939.212 kb on - strand, within CCNA_00861at 939.240 kb on + strand, within CCNA_00861at 939.248 kb on - strand, within CCNA_00861at 939.248 kb on - strand, within CCNA_00861at 939.248 kb on - strand, within CCNA_00861at 939.248 kb on - strand, within CCNA_00861at 939.282 kb on + strand, within CCNA_00861at 939.309 kb on - strand, within CCNA_00861at 939.323 kb on - strand, within CCNA_00861at 939.374 kb on + strand, within CCNA_00861at 939.396 kb on + strand, within CCNA_00861at 939.463 kb on + strand, within CCNA_00861at 939.465 kb on + strand, within CCNA_00861at 939.496 kb on - strand, within CCNA_00861at 939.509 kb on + strandat 939.509 kb on + strandat 939.517 kb on - strandat 939.573 kb on - strandat 939.685 kb on - strandat 939.758 kb on - strandat 939.766 kb on + strandat 939.774 kb on - strandat 939.779 kb on - strandat 939.876 kb on - strand, within CCNA_00862at 939.903 kb on - strand, within CCNA_00862at 939.903 kb on - strand, within CCNA_00862at 939.903 kb on - strand, within CCNA_00862at 939.904 kb on - strand, within CCNA_00862at 939.980 kb on - strand, within CCNA_00862at 939.985 kb on - strand, within CCNA_00862at 940.030 kb on - strand, within CCNA_00862at 940.031 kb on + strand, within CCNA_00862at 940.081 kb on + strand, within CCNA_00862at 940.099 kb on - strand, within CCNA_00862at 940.104 kb on + strand, within CCNA_00862at 940.112 kb on - strand, within CCNA_00862at 940.135 kb on - strand, within CCNA_00862at 940.281 kb on + strand, within CCNA_00862at 940.307 kb on - strand, within CCNA_00862at 940.307 kb on - strand, within CCNA_00862at 940.344 kb on - strand, within CCNA_00862at 940.441 kb on - strand, within CCNA_00862at 940.441 kb on - strand, within CCNA_00862at 940.521 kb on - strand, within CCNA_00862at 940.521 kb on - strand, within CCNA_00862at 940.557 kb on + strand, within CCNA_00862at 940.557 kb on + strand, within CCNA_00862

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Vancomycin 0.007 mg/ml
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938,009 + CCNA_00859 0.38 -1.5
938,047 + CCNA_00859 0.42 +0.3
938,053 - CCNA_00859 0.42 +0.3
938,055 - CCNA_00859 0.43 -0.9
938,089 + CCNA_00859 0.47 -1.1
938,115 + CCNA_00859 0.49 +0.7
938,123 - CCNA_00859 0.50 +1.1
938,192 + CCNA_00859 0.58 -0.0
938,197 + CCNA_00859 0.59 -1.6
938,197 + CCNA_00859 0.59 -1.6
938,200 - CCNA_00859 0.59 +0.6
938,220 + CCNA_00859 0.61 -0.1
938,264 + CCNA_00859 0.66 +0.4
938,264 + CCNA_00859 0.66 -1.3
938,264 + CCNA_00859 0.66 -0.6
938,264 + CCNA_00859 0.66 +1.6
938,272 - CCNA_00859 0.67 +0.4
938,272 - CCNA_00859 0.67 -2.0
938,272 - CCNA_00859 0.67 -0.4
938,287 - CCNA_00859 0.69 +0.2
938,294 + CCNA_00859 0.70 -0.6
938,301 + CCNA_00859 0.70 -0.2
938,301 - CCNA_00859 0.70 +1.4
938,309 - CCNA_00859 0.71 +1.4
938,311 + CCNA_00859 0.72 -0.3
938,330 + CCNA_00859 0.74 +0.1
938,330 + CCNA_00859 0.74 -0.8
938,340 + CCNA_00859 0.75 -1.7
938,345 - CCNA_00859 0.75 +0.6
938,348 - CCNA_00859 0.76 -0.3
938,348 - CCNA_00859 0.76 -0.2
938,355 - CCNA_00859 0.76 -0.7
938,377 - CCNA_00859 0.79 -0.3
938,402 + CCNA_00859 0.82 -1.3
938,404 + CCNA_00859 0.82 +0.1
938,410 - CCNA_00859 0.83 +0.8
938,416 - CCNA_00859 0.83 -0.6
938,427 + CCNA_00859 0.85 -1.3
938,428 - CCNA_00859 0.85 -0.1
938,435 - CCNA_00859 0.85 +0.9
938,435 - CCNA_00859 0.85 -0.2
938,435 - CCNA_00859 0.85 +0.3
938,435 - CCNA_00859 0.85 -2.1
938,451 + CCNA_00859 0.87 -1.9
938,507 - +0.9
938,508 - +0.8
938,524 + +0.7
938,524 + +0.7
938,524 + +0.9
938,524 + -0.8
938,524 + -0.4
938,532 - +0.3
938,532 - -0.4
938,532 - -1.8
938,532 - +0.4
938,569 - -0.4
938,615 + +1.0
938,623 - +1.5
938,696 - CCNA_00860 0.32 +0.2
938,712 + CCNA_00860 0.39 -0.5
938,738 + CCNA_00860 0.50 +1.6
938,752 - CCNA_00860 0.56 +0.3
938,757 - CCNA_00860 0.58 +0.2
938,848 + -0.3
938,928 + +0.6
938,948 + -1.2
938,948 + -0.6
938,956 - +1.4
938,958 + +3.0
938,984 - +1.7
938,984 - -1.6
938,993 - -2.3
938,996 + +1.7
939,006 + -1.3
939,006 + -0.2
939,032 - -0.7
939,075 + CCNA_00861 0.17 -2.0
939,083 - CCNA_00861 0.18 -1.9
939,110 + CCNA_00861 0.23 +0.1
939,118 - CCNA_00861 0.24 +1.0
939,124 + CCNA_00861 0.25 -1.7
939,124 + CCNA_00861 0.25 +0.7
939,124 + CCNA_00861 0.25 -0.9
939,124 + CCNA_00861 0.25 -2.4
939,132 - CCNA_00861 0.26 -0.6
939,132 - CCNA_00861 0.26 -0.8
939,132 - CCNA_00861 0.26 -0.1
939,171 + CCNA_00861 0.33 -1.0
939,171 + +1.4
939,204 + CCNA_00861 0.39 -0.2
939,212 - CCNA_00861 0.40 +1.0
939,240 + CCNA_00861 0.45 -1.4
939,248 - CCNA_00861 0.46 -1.8
939,248 - CCNA_00861 0.46 +0.1
939,248 - CCNA_00861 0.46 -1.3
939,248 - CCNA_00861 0.46 +0.4
939,282 + CCNA_00861 0.52 -0.5
939,309 - CCNA_00861 0.57 +0.6
939,323 - CCNA_00861 0.59 -0.8
939,374 + CCNA_00861 0.68 -1.4
939,396 + CCNA_00861 0.72 -1.3
939,463 + CCNA_00861 0.84 -0.8
939,465 + CCNA_00861 0.84 +1.7
939,496 - CCNA_00861 0.89 -1.5
939,509 + +3.0
939,509 + +0.1
939,517 - -1.1
939,573 - -2.4
939,685 - -0.8
939,758 - +0.5
939,766 + +2.4
939,774 - -0.4
939,779 - +0.5
939,876 - CCNA_00862 0.10 +0.7
939,903 - CCNA_00862 0.12 +1.6
939,903 - CCNA_00862 0.12 +2.8
939,903 - CCNA_00862 0.12 +0.7
939,904 - CCNA_00862 0.12 -1.6
939,980 - CCNA_00862 0.16 -0.5
939,985 - CCNA_00862 0.16 +0.2
940,030 - CCNA_00862 0.19 -1.7
940,031 + CCNA_00862 0.19 -1.2
940,081 + CCNA_00862 0.22 +1.4
940,099 - CCNA_00862 0.23 +2.1
940,104 + CCNA_00862 0.23 -0.9
940,112 - CCNA_00862 0.23 -1.9
940,135 - CCNA_00862 0.25 -0.2
940,281 + CCNA_00862 0.33 +0.8
940,307 - CCNA_00862 0.34 +0.6
940,307 - CCNA_00862 0.34 +0.6
940,344 - CCNA_00862 0.36 +0.8
940,441 - CCNA_00862 0.42 -1.2
940,441 - CCNA_00862 0.42 -1.2
940,521 - CCNA_00862 0.46 -1.3
940,521 - CCNA_00862 0.46 -0.5
940,557 + CCNA_00862 0.48 -0.2
940,557 + CCNA_00862 0.48 +0.6

Or see this region's nucleotide sequence