Experiment: PYE with Vancomycin 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00832 and CCNA_00833 are separated by 138 nucleotides CCNA_00833 and CCNA_03942 are separated by 136 nucleotides CCNA_03942 and CCNA_00834 are separated by 171 nucleotides
CCNA_00832: CCNA_00832 - LysR-family transcriptional regulator, at 897,582 to 898,481
_00832
CCNA_00833: CCNA_00833 - NAD(P)H:quinone oxidoreductase, at 898,620 to 899,219
_00833
CCNA_03942: CCNA_03942 - hypothetical protein, at 899,356 to 899,490
_03942
CCNA_00834: CCNA_00834 - flagellin FljM, at 899,662 to 900,483
_00834
Position (kb) 898
899
900 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 897.646 kb on - strand at 897.648 kb on + strand at 897.656 kb on - strand at 897.656 kb on - strand at 897.670 kb on - strand at 897.675 kb on - strand, within CCNA_00832 at 897.691 kb on + strand, within CCNA_00832 at 897.694 kb on - strand, within CCNA_00832 at 897.696 kb on + strand, within CCNA_00832 at 897.704 kb on - strand, within CCNA_00832 at 897.730 kb on + strand, within CCNA_00832 at 897.745 kb on - strand, within CCNA_00832 at 897.745 kb on - strand, within CCNA_00832 at 897.745 kb on - strand, within CCNA_00832 at 897.751 kb on - strand, within CCNA_00832 at 897.793 kb on + strand, within CCNA_00832 at 897.816 kb on + strand, within CCNA_00832 at 897.823 kb on + strand, within CCNA_00832 at 897.824 kb on - strand, within CCNA_00832 at 897.824 kb on - strand, within CCNA_00832 at 897.833 kb on + strand, within CCNA_00832 at 897.860 kb on - strand, within CCNA_00832 at 897.865 kb on - strand, within CCNA_00832 at 897.878 kb on - strand, within CCNA_00832 at 897.891 kb on + strand, within CCNA_00832 at 897.892 kb on - strand, within CCNA_00832 at 897.892 kb on - strand, within CCNA_00832 at 897.892 kb on - strand, within CCNA_00832 at 897.892 kb on - strand, within CCNA_00832 at 897.892 kb on - strand, within CCNA_00832 at 897.917 kb on + strand, within CCNA_00832 at 897.953 kb on + strand, within CCNA_00832 at 897.953 kb on + strand, within CCNA_00832 at 897.953 kb on + strand, within CCNA_00832 at 897.961 kb on - strand, within CCNA_00832 at 897.979 kb on + strand, within CCNA_00832 at 897.987 kb on - strand, within CCNA_00832 at 898.034 kb on + strand, within CCNA_00832 at 898.037 kb on - strand, within CCNA_00832 at 898.042 kb on - strand, within CCNA_00832 at 898.047 kb on + strand, within CCNA_00832 at 898.047 kb on + strand, within CCNA_00832 at 898.055 kb on - strand, within CCNA_00832 at 898.055 kb on - strand, within CCNA_00832 at 898.055 kb on - strand, within CCNA_00832 at 898.055 kb on - strand, within CCNA_00832 at 898.055 kb on - strand, within CCNA_00832 at 898.055 kb on - strand, within CCNA_00832 at 898.055 kb on - strand, within CCNA_00832 at 898.055 kb on - strand, within CCNA_00832 at 898.056 kb on + strand, within CCNA_00832 at 898.099 kb on - strand, within CCNA_00832 at 898.100 kb on - strand, within CCNA_00832 at 898.107 kb on + strand at 898.121 kb on - strand, within CCNA_00832 at 898.125 kb on + strand, within CCNA_00832 at 898.149 kb on + strand, within CCNA_00832 at 898.168 kb on - strand, within CCNA_00832 at 898.168 kb on - strand, within CCNA_00832 at 898.172 kb on + strand, within CCNA_00832 at 898.172 kb on + strand, within CCNA_00832 at 898.185 kb on - strand, within CCNA_00832 at 898.199 kb on - strand, within CCNA_00832 at 898.203 kb on + strand, within CCNA_00832 at 898.210 kb on + strand, within CCNA_00832 at 898.210 kb on + strand, within CCNA_00832 at 898.210 kb on + strand, within CCNA_00832 at 898.218 kb on - strand, within CCNA_00832 at 898.218 kb on - strand, within CCNA_00832 at 898.218 kb on - strand, within CCNA_00832 at 898.218 kb on - strand, within CCNA_00832 at 898.218 kb on - strand, within CCNA_00832 at 898.224 kb on - strand, within CCNA_00832 at 898.295 kb on - strand, within CCNA_00832 at 898.300 kb on - strand, within CCNA_00832 at 898.321 kb on + strand, within CCNA_00832 at 898.321 kb on + strand, within CCNA_00832 at 898.329 kb on - strand, within CCNA_00832 at 898.329 kb on - strand, within CCNA_00832 at 898.386 kb on + strand, within CCNA_00832 at 898.414 kb on - strand at 898.414 kb on - strand at 898.414 kb on - strand at 898.424 kb on + strand at 898.441 kb on + strand at 898.449 kb on - strand at 898.449 kb on - strand at 898.449 kb on - strand at 898.449 kb on - strand at 898.450 kb on - strand at 898.476 kb on + strand at 898.476 kb on + strand at 898.476 kb on + strand at 898.476 kb on + strand at 898.477 kb on + strand at 898.484 kb on - strand at 898.484 kb on - strand at 898.484 kb on - strand at 898.484 kb on - strand at 898.484 kb on - strand at 898.484 kb on - strand at 898.484 kb on - strand at 898.484 kb on - strand at 898.561 kb on - strand at 898.597 kb on + strand at 898.597 kb on + strand at 898.603 kb on + strand at 898.605 kb on - strand at 898.661 kb on + strand at 898.668 kb on - strand at 898.668 kb on - strand at 898.668 kb on - strand at 898.669 kb on - strand at 898.669 kb on - strand at 898.682 kb on - strand, within CCNA_00833 at 898.721 kb on + strand, within CCNA_00833 at 898.733 kb on + strand, within CCNA_00833 at 898.742 kb on - strand, within CCNA_00833 at 898.742 kb on - strand, within CCNA_00833 at 898.772 kb on + strand, within CCNA_00833 at 898.772 kb on + strand, within CCNA_00833 at 898.772 kb on + strand, within CCNA_00833 at 898.780 kb on - strand, within CCNA_00833 at 898.780 kb on - strand, within CCNA_00833 at 898.780 kb on - strand, within CCNA_00833 at 898.780 kb on - strand, within CCNA_00833 at 898.814 kb on - strand, within CCNA_00833 at 898.814 kb on - strand, within CCNA_00833 at 898.906 kb on + strand, within CCNA_00833 at 898.941 kb on - strand, within CCNA_00833 at 898.963 kb on + strand, within CCNA_00833 at 898.971 kb on - strand, within CCNA_00833 at 898.994 kb on + strand, within CCNA_00833 at 899.061 kb on + strand, within CCNA_00833 at 899.079 kb on - strand, within CCNA_00833 at 899.139 kb on - strand, within CCNA_00833 at 899.144 kb on - strand, within CCNA_00833 at 899.213 kb on - strand at 899.216 kb on - strand at 899.262 kb on - strand at 899.361 kb on - strand at 899.361 kb on - strand at 899.376 kb on - strand, within CCNA_03942 at 899.392 kb on - strand, within CCNA_03942 at 899.420 kb on + strand, within CCNA_03942 at 899.428 kb on - strand, within CCNA_03942 at 899.629 kb on + strand at 899.639 kb on + strand at 899.665 kb on + strand at 899.665 kb on + strand at 899.665 kb on + strand at 899.665 kb on + strand at 899.673 kb on - strand at 899.673 kb on - strand at 899.673 kb on - strand at 899.675 kb on + strand at 899.678 kb on - strand at 899.683 kb on - strand at 899.737 kb on - strand at 899.752 kb on - strand, within CCNA_00834 at 899.755 kb on + strand, within CCNA_00834 at 899.978 kb on + strand, within CCNA_00834 at 899.988 kb on + strand, within CCNA_00834 at 900.007 kb on + strand, within CCNA_00834 at 900.059 kb on - strand, within CCNA_00834 at 900.065 kb on - strand, within CCNA_00834 at 900.065 kb on - strand, within CCNA_00834 at 900.089 kb on + strand, within CCNA_00834 at 900.089 kb on + strand, within CCNA_00834 at 900.127 kb on + strand, within CCNA_00834 at 900.147 kb on + strand, within CCNA_00834 at 900.148 kb on + strand, within CCNA_00834 at 900.150 kb on - strand, within CCNA_00834 at 900.155 kb on - strand, within CCNA_00834 at 900.156 kb on - strand, within CCNA_00834 at 900.156 kb on - strand, within CCNA_00834 at 900.156 kb on - strand, within CCNA_00834
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Vancomycin 0.007 mg/ml remove 897,646 - +0.3 897,648 + +1.5 897,656 - +1.7 897,656 - +0.9 897,670 - -0.4 897,675 - CCNA_00832 0.10 +0.9 897,691 + CCNA_00832 0.12 +1.2 897,694 - CCNA_00832 0.12 +3.2 897,696 + CCNA_00832 0.13 +0.1 897,704 - CCNA_00832 0.14 +0.3 897,730 + CCNA_00832 0.16 +0.1 897,745 - CCNA_00832 0.18 +0.1 897,745 - CCNA_00832 0.18 +0.3 897,745 - CCNA_00832 0.18 +0.7 897,751 - CCNA_00832 0.19 +0.5 897,793 + CCNA_00832 0.23 -0.8 897,816 + CCNA_00832 0.26 +0.1 897,823 + CCNA_00832 0.27 -2.4 897,824 - CCNA_00832 0.27 +1.8 897,824 - CCNA_00832 0.27 +0.2 897,833 + CCNA_00832 0.28 +4.0 897,860 - CCNA_00832 0.31 +0.9 897,865 - CCNA_00832 0.31 +0.1 897,878 - CCNA_00832 0.33 +0.7 897,891 + CCNA_00832 0.34 -0.2 897,892 - CCNA_00832 0.34 +0.5 897,892 - CCNA_00832 0.34 +0.8 897,892 - CCNA_00832 0.34 +1.2 897,892 - CCNA_00832 0.34 +1.0 897,892 - CCNA_00832 0.34 +0.3 897,917 + CCNA_00832 0.37 -0.7 897,953 + CCNA_00832 0.41 -1.9 897,953 + CCNA_00832 0.41 -0.6 897,953 + CCNA_00832 0.41 -0.9 897,961 - CCNA_00832 0.42 +0.5 897,979 + CCNA_00832 0.44 +1.9 897,987 - CCNA_00832 0.45 -0.4 898,034 + CCNA_00832 0.50 +0.5 898,037 - CCNA_00832 0.51 +0.6 898,042 - CCNA_00832 0.51 -0.1 898,047 + CCNA_00832 0.52 -1.6 898,047 + CCNA_00832 0.52 +0.7 898,055 - CCNA_00832 0.53 +1.2 898,055 - CCNA_00832 0.53 -1.9 898,055 - CCNA_00832 0.53 +0.6 898,055 - CCNA_00832 0.53 +0.8 898,055 - CCNA_00832 0.53 -0.3 898,055 - CCNA_00832 0.53 -0.3 898,055 - CCNA_00832 0.53 +1.3 898,055 - CCNA_00832 0.53 -0.9 898,056 + CCNA_00832 0.53 -0.4 898,099 - CCNA_00832 0.57 +0.5 898,100 - CCNA_00832 0.58 -0.4 898,107 + +2.0 898,121 - CCNA_00832 0.60 +0.4 898,125 + CCNA_00832 0.60 -0.9 898,149 + CCNA_00832 0.63 +0.9 898,168 - CCNA_00832 0.65 -0.0 898,168 - CCNA_00832 0.65 -0.3 898,172 + CCNA_00832 0.66 -1.7 898,172 + CCNA_00832 0.66 +0.3 898,185 - CCNA_00832 0.67 +0.4 898,199 - CCNA_00832 0.69 +0.1 898,203 + CCNA_00832 0.69 +0.7 898,210 + CCNA_00832 0.70 +0.9 898,210 + CCNA_00832 0.70 -1.0 898,210 + CCNA_00832 0.70 -0.2 898,218 - CCNA_00832 0.71 +0.8 898,218 - CCNA_00832 0.71 +2.3 898,218 - CCNA_00832 0.71 +0.7 898,218 - CCNA_00832 0.71 -0.1 898,218 - CCNA_00832 0.71 +0.1 898,224 - CCNA_00832 0.71 +0.7 898,295 - CCNA_00832 0.79 +0.4 898,300 - CCNA_00832 0.80 +0.1 898,321 + CCNA_00832 0.82 -0.1 898,321 + CCNA_00832 0.82 -0.0 898,329 - CCNA_00832 0.83 +0.5 898,329 - CCNA_00832 0.83 -0.3 898,386 + CCNA_00832 0.89 +0.7 898,414 - -0.2 898,414 - +0.3 898,414 - +0.2 898,424 + -1.9 898,441 + -1.4 898,449 - -0.8 898,449 - +0.8 898,449 - -0.4 898,449 - -1.7 898,450 - -1.3 898,476 + -0.0 898,476 + -0.1 898,476 + -0.9 898,476 + -0.4 898,477 + -1.0 898,484 - -0.4 898,484 - -1.6 898,484 - +0.5 898,484 - -0.2 898,484 - +1.7 898,484 - -1.5 898,484 - -2.2 898,484 - +0.9 898,561 - -1.0 898,597 + -0.3 898,597 + +1.2 898,603 + -1.9 898,605 - -1.2 898,661 + -0.4 898,668 - -1.9 898,668 - -0.2 898,668 - +0.3 898,669 - -0.6 898,669 - +0.2 898,682 - CCNA_00833 0.10 +0.6 898,721 + CCNA_00833 0.17 +0.5 898,733 + CCNA_00833 0.19 -0.2 898,742 - CCNA_00833 0.20 -1.9 898,742 - CCNA_00833 0.20 +0.2 898,772 + CCNA_00833 0.25 +0.6 898,772 + CCNA_00833 0.25 -1.6 898,772 + CCNA_00833 0.25 +0.9 898,780 - CCNA_00833 0.27 -1.0 898,780 - CCNA_00833 0.27 -0.4 898,780 - CCNA_00833 0.27 +0.2 898,780 - CCNA_00833 0.27 -1.0 898,814 - CCNA_00833 0.32 -1.5 898,814 - CCNA_00833 0.32 +0.2 898,906 + CCNA_00833 0.48 -1.2 898,941 - CCNA_00833 0.54 -0.0 898,963 + CCNA_00833 0.57 -0.9 898,971 - CCNA_00833 0.58 -0.7 898,994 + CCNA_00833 0.62 -0.1 899,061 + CCNA_00833 0.73 -0.5 899,079 - CCNA_00833 0.77 -0.1 899,139 - CCNA_00833 0.86 +0.3 899,144 - CCNA_00833 0.87 -1.1 899,213 - +0.9 899,216 - -1.0 899,262 - -2.0 899,361 - -0.4 899,361 - -1.6 899,376 - CCNA_03942 0.15 +0.1 899,392 - CCNA_03942 0.27 -1.5 899,420 + CCNA_03942 0.47 -1.1 899,428 - CCNA_03942 0.53 -0.1 899,629 + +0.6 899,639 + +2.6 899,665 + -0.1 899,665 + -0.0 899,665 + -0.4 899,665 + -0.2 899,673 - -1.3 899,673 - +0.8 899,673 - +0.2 899,675 + -0.1 899,678 - -0.2 899,683 - +2.0 899,737 - -0.9 899,752 - CCNA_00834 0.11 -0.6 899,755 + CCNA_00834 0.11 -0.5 899,978 + CCNA_00834 0.38 -0.5 899,988 + CCNA_00834 0.40 +1.0 900,007 + CCNA_00834 0.42 +0.9 900,059 - CCNA_00834 0.48 +2.1 900,065 - CCNA_00834 0.49 +0.8 900,065 - CCNA_00834 0.49 -2.0 900,089 + CCNA_00834 0.52 +1.0 900,089 + CCNA_00834 0.52 +0.6 900,127 + CCNA_00834 0.57 -0.4 900,147 + CCNA_00834 0.59 +1.0 900,148 + CCNA_00834 0.59 +1.2 900,150 - CCNA_00834 0.59 -0.8 900,155 - CCNA_00834 0.60 -0.8 900,156 - CCNA_00834 0.60 -1.4 900,156 - CCNA_00834 0.60 -1.4 900,156 - CCNA_00834 0.60 -1.6
Or see this region's nucleotide sequence