Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00821

Experiment: PYE with Vancomycin 0.007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00820 and CCNA_00821 are separated by 44 nucleotidesCCNA_00821 and CCNA_00822 are separated by 71 nucleotidesCCNA_00822 and CCNA_00823 are separated by 135 nucleotides CCNA_00820: CCNA_00820 - 3-ketoacyl-CoA thiolase, at 882,223 to 883,395 _00820 CCNA_00821: CCNA_00821 - hypothetical protein, at 883,440 to 883,889 _00821 CCNA_00822: CCNA_00822 - hypothetical protein, at 883,961 to 884,305 _00822 CCNA_00823: CCNA_00823 - LuxR-like DNA-binding protein, at 884,441 to 885,244 _00823 CCNA_03941: CCNA_03941 - hypothetical protein, at 884,548 to 884,910 _03941 Position (kb) 883 884Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 882.458 kb on + strand, within CCNA_00820at 882.460 kb on - strand, within CCNA_00820at 882.507 kb on - strand, within CCNA_00820at 882.507 kb on - strand, within CCNA_00820at 882.557 kb on - strand, within CCNA_00820at 882.586 kb on - strand, within CCNA_00820at 882.596 kb on + strand, within CCNA_00820at 882.606 kb on - strand, within CCNA_00820at 882.658 kb on - strand, within CCNA_00820at 882.660 kb on + strand, within CCNA_00820at 882.663 kb on - strand, within CCNA_00820at 882.710 kb on - strand, within CCNA_00820at 882.763 kb on + strand, within CCNA_00820at 882.763 kb on + strand, within CCNA_00820at 882.776 kb on - strand, within CCNA_00820at 882.791 kb on + strand, within CCNA_00820at 882.834 kb on - strand, within CCNA_00820at 882.864 kb on + strand, within CCNA_00820at 882.867 kb on - strand, within CCNA_00820at 882.867 kb on - strand, within CCNA_00820at 882.867 kb on - strand, within CCNA_00820at 882.872 kb on - strand, within CCNA_00820at 882.880 kb on - strand, within CCNA_00820at 882.901 kb on - strand, within CCNA_00820at 882.960 kb on + strand, within CCNA_00820at 882.960 kb on + strand, within CCNA_00820at 882.968 kb on - strand, within CCNA_00820at 882.998 kb on + strand, within CCNA_00820at 883.003 kb on + strand, within CCNA_00820at 883.010 kb on + strand, within CCNA_00820at 883.010 kb on + strand, within CCNA_00820at 883.016 kb on - strand, within CCNA_00820at 883.018 kb on - strand, within CCNA_00820at 883.018 kb on - strand, within CCNA_00820at 883.036 kb on + strand, within CCNA_00820at 883.037 kb on - strand, within CCNA_00820at 883.132 kb on - strand, within CCNA_00820at 883.160 kb on + strand, within CCNA_00820at 883.160 kb on + strand, within CCNA_00820at 883.168 kb on - strand, within CCNA_00820at 883.168 kb on - strand, within CCNA_00820at 883.170 kb on + strand, within CCNA_00820at 883.170 kb on + strand, within CCNA_00820at 883.178 kb on - strand, within CCNA_00820at 883.178 kb on - strand, within CCNA_00820at 883.178 kb on - strand, within CCNA_00820at 883.178 kb on - strand, within CCNA_00820at 883.178 kb on - strand, within CCNA_00820at 883.178 kb on - strand, within CCNA_00820at 883.242 kb on - strand, within CCNA_00820at 883.255 kb on - strand, within CCNA_00820at 883.260 kb on - strand, within CCNA_00820at 883.260 kb on - strand, within CCNA_00820at 883.289 kb on - strandat 883.299 kb on - strandat 883.327 kb on + strandat 883.328 kb on + strandat 883.336 kb on - strandat 883.469 kb on - strandat 883.496 kb on - strand, within CCNA_00821at 883.496 kb on - strand, within CCNA_00821at 883.512 kb on - strand, within CCNA_00821at 883.556 kb on + strand, within CCNA_00821at 883.559 kb on - strand, within CCNA_00821at 883.566 kb on + strand, within CCNA_00821at 883.566 kb on + strand, within CCNA_00821at 883.574 kb on - strand, within CCNA_00821at 883.574 kb on - strand, within CCNA_00821at 883.574 kb on - strand, within CCNA_00821at 883.574 kb on - strand, within CCNA_00821at 883.594 kb on + strand, within CCNA_00821at 883.598 kb on + strand, within CCNA_00821at 883.599 kb on + strand, within CCNA_00821at 883.599 kb on + strand, within CCNA_00821at 883.632 kb on + strand, within CCNA_00821at 883.633 kb on + strand, within CCNA_00821at 883.640 kb on - strand, within CCNA_00821at 883.643 kb on + strand, within CCNA_00821at 883.669 kb on + strand, within CCNA_00821at 883.677 kb on - strand, within CCNA_00821at 883.726 kb on + strand, within CCNA_00821at 883.731 kb on + strand, within CCNA_00821at 883.736 kb on + strand, within CCNA_00821at 883.736 kb on + strand, within CCNA_00821at 883.736 kb on + strand, within CCNA_00821at 883.739 kb on - strand, within CCNA_00821at 883.739 kb on - strand, within CCNA_00821at 883.741 kb on + strand, within CCNA_00821at 883.744 kb on - strand, within CCNA_00821at 883.746 kb on + strand, within CCNA_00821at 883.746 kb on + strand, within CCNA_00821at 883.746 kb on + strand, within CCNA_00821at 883.746 kb on + strand, within CCNA_00821at 883.751 kb on + strand, within CCNA_00821at 883.754 kb on - strand, within CCNA_00821at 883.770 kb on + strand, within CCNA_00821at 883.778 kb on - strand, within CCNA_00821at 883.778 kb on - strand, within CCNA_00821at 883.778 kb on - strand, within CCNA_00821at 883.779 kb on - strand, within CCNA_00821at 883.783 kb on - strand, within CCNA_00821at 883.807 kb on - strand, within CCNA_00821at 883.818 kb on + strand, within CCNA_00821at 883.834 kb on + strand, within CCNA_00821at 883.877 kb on + strandat 883.877 kb on + strandat 883.877 kb on + strandat 883.899 kb on + strandat 883.907 kb on - strandat 883.907 kb on - strandat 883.907 kb on - strandat 883.947 kb on - strandat 883.951 kb on + strandat 883.958 kb on + strandat 883.958 kb on + strandat 883.958 kb on + strandat 883.958 kb on + strandat 883.966 kb on - strandat 883.966 kb on - strandat 883.966 kb on - strandat 883.966 kb on - strandat 884.001 kb on + strand, within CCNA_00822at 884.001 kb on + strand, within CCNA_00822at 884.001 kb on + strand, within CCNA_00822at 884.001 kb on + strand, within CCNA_00822at 884.001 kb on + strand, within CCNA_00822at 884.001 kb on + strand, within CCNA_00822at 884.001 kb on + strand, within CCNA_00822at 884.001 kb on + strand, within CCNA_00822at 884.009 kb on - strand, within CCNA_00822at 884.009 kb on - strand, within CCNA_00822at 884.009 kb on - strand, within CCNA_00822at 884.009 kb on - strand, within CCNA_00822at 884.009 kb on - strand, within CCNA_00822at 884.009 kb on - strand, within CCNA_00822at 884.047 kb on - strand, within CCNA_00822at 884.049 kb on + strand, within CCNA_00822at 884.052 kb on - strand, within CCNA_00822at 884.052 kb on - strand, within CCNA_00822at 884.052 kb on - strand, within CCNA_00822at 884.061 kb on + strand, within CCNA_00822at 884.074 kb on + strand, within CCNA_00822at 884.082 kb on - strand, within CCNA_00822at 884.101 kb on - strand, within CCNA_00822at 884.102 kb on + strand, within CCNA_00822at 884.107 kb on + strand, within CCNA_00822at 884.110 kb on - strand, within CCNA_00822at 884.115 kb on - strand, within CCNA_00822at 884.117 kb on - strand, within CCNA_00822at 884.117 kb on - strand, within CCNA_00822at 884.122 kb on - strand, within CCNA_00822at 884.122 kb on - strand, within CCNA_00822at 884.154 kb on - strand, within CCNA_00822at 884.154 kb on - strand, within CCNA_00822at 884.163 kb on + strand, within CCNA_00822at 884.171 kb on - strand, within CCNA_00822at 884.171 kb on - strand, within CCNA_00822at 884.203 kb on - strand, within CCNA_00822at 884.212 kb on - strand, within CCNA_00822at 884.243 kb on - strand, within CCNA_00822at 884.243 kb on - strand, within CCNA_00822at 884.255 kb on + strand, within CCNA_00822at 884.255 kb on + strand, within CCNA_00822at 884.263 kb on - strand, within CCNA_00822at 884.263 kb on - strand, within CCNA_00822at 884.263 kb on - strand, within CCNA_00822at 884.296 kb on + strandat 884.296 kb on + strandat 884.304 kb on - strandat 884.304 kb on - strandat 884.309 kb on - strandat 884.348 kb on - strandat 884.348 kb on - strandat 884.354 kb on - strandat 884.354 kb on - strandat 884.369 kb on - strandat 884.389 kb on + strandat 884.389 kb on + strandat 884.389 kb on + strandat 884.389 kb on + strandat 884.389 kb on + strandat 884.389 kb on + strandat 884.397 kb on - strandat 884.398 kb on + strandat 884.398 kb on + strandat 884.399 kb on + strandat 884.399 kb on + strandat 884.408 kb on + strandat 884.416 kb on - strandat 884.421 kb on - strandat 884.435 kb on - strandat 884.455 kb on - strandat 884.463 kb on + strandat 884.518 kb on - strandat 884.539 kb on + strand, within CCNA_00823at 884.562 kb on - strandat 884.576 kb on - strandat 884.590 kb on - strandat 884.666 kb on + strandat 884.669 kb on - strandat 884.669 kb on - strandat 884.738 kb on + strandat 884.789 kb on + strandat 884.814 kb on + strandat 884.821 kb on + strandat 884.847 kb on - strandat 884.848 kb on - strandat 884.877 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Vancomycin 0.007 mg/ml
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882,458 + CCNA_00820 0.20 -0.3
882,460 - CCNA_00820 0.20 -0.3
882,507 - CCNA_00820 0.24 +0.7
882,507 - CCNA_00820 0.24 -0.2
882,557 - CCNA_00820 0.28 -0.4
882,586 - CCNA_00820 0.31 -0.5
882,596 + CCNA_00820 0.32 -0.7
882,606 - CCNA_00820 0.33 +0.1
882,658 - CCNA_00820 0.37 -0.2
882,660 + CCNA_00820 0.37 +0.4
882,663 - CCNA_00820 0.38 -0.5
882,710 - CCNA_00820 0.42 +1.7
882,763 + CCNA_00820 0.46 -0.3
882,763 + CCNA_00820 0.46 +0.7
882,776 - CCNA_00820 0.47 -2.0
882,791 + CCNA_00820 0.48 -1.8
882,834 - CCNA_00820 0.52 -2.2
882,864 + CCNA_00820 0.55 +2.3
882,867 - CCNA_00820 0.55 -1.5
882,867 - CCNA_00820 0.55 -0.9
882,867 - CCNA_00820 0.55 -0.4
882,872 - CCNA_00820 0.55 -0.3
882,880 - CCNA_00820 0.56 -1.8
882,901 - CCNA_00820 0.58 -0.7
882,960 + CCNA_00820 0.63 -0.7
882,960 + CCNA_00820 0.63 +3.3
882,968 - CCNA_00820 0.64 -0.4
882,998 + CCNA_00820 0.66 -1.1
883,003 + CCNA_00820 0.66 +2.2
883,010 + CCNA_00820 0.67 +2.5
883,010 + CCNA_00820 0.67 +0.6
883,016 - CCNA_00820 0.68 +1.8
883,018 - CCNA_00820 0.68 -0.1
883,018 - CCNA_00820 0.68 -1.1
883,036 + CCNA_00820 0.69 -0.8
883,037 - CCNA_00820 0.69 -1.0
883,132 - CCNA_00820 0.77 +0.5
883,160 + CCNA_00820 0.80 -0.7
883,160 + CCNA_00820 0.80 -0.6
883,168 - CCNA_00820 0.81 +1.0
883,168 - CCNA_00820 0.81 +0.3
883,170 + CCNA_00820 0.81 -0.4
883,170 + CCNA_00820 0.81 -0.8
883,178 - CCNA_00820 0.81 -0.5
883,178 - CCNA_00820 0.81 -0.3
883,178 - CCNA_00820 0.81 -0.3
883,178 - CCNA_00820 0.81 -0.9
883,178 - CCNA_00820 0.81 -0.5
883,178 - CCNA_00820 0.81 +3.5
883,242 - CCNA_00820 0.87 -1.7
883,255 - CCNA_00820 0.88 -1.4
883,260 - CCNA_00820 0.88 -0.2
883,260 - CCNA_00820 0.88 -0.5
883,289 - +0.0
883,299 - -1.6
883,327 + -2.4
883,328 + -1.2
883,336 - +1.0
883,469 - -0.4
883,496 - CCNA_00821 0.12 +1.0
883,496 - CCNA_00821 0.12 +0.3
883,512 - CCNA_00821 0.16 -1.1
883,556 + CCNA_00821 0.26 -2.6
883,559 - CCNA_00821 0.26 -2.5
883,566 + CCNA_00821 0.28 -0.9
883,566 + CCNA_00821 0.28 -3.1
883,574 - CCNA_00821 0.30 -0.2
883,574 - CCNA_00821 0.30 -0.7
883,574 - CCNA_00821 0.30 -0.5
883,574 - CCNA_00821 0.30 -1.7
883,594 + CCNA_00821 0.34 -0.5
883,598 + CCNA_00821 0.35 -1.2
883,599 + CCNA_00821 0.35 -0.2
883,599 + CCNA_00821 0.35 -1.7
883,632 + CCNA_00821 0.43 -3.2
883,633 + CCNA_00821 0.43 -1.8
883,640 - CCNA_00821 0.44 -0.6
883,643 + CCNA_00821 0.45 -2.2
883,669 + CCNA_00821 0.51 -1.5
883,677 - CCNA_00821 0.53 -1.8
883,726 + CCNA_00821 0.64 -2.2
883,731 + CCNA_00821 0.65 -0.8
883,736 + CCNA_00821 0.66 +0.5
883,736 + CCNA_00821 0.66 -1.6
883,736 + CCNA_00821 0.66 +0.5
883,739 - CCNA_00821 0.66 -1.3
883,739 - CCNA_00821 0.66 +0.0
883,741 + CCNA_00821 0.67 +0.9
883,744 - CCNA_00821 0.68 -1.6
883,746 + CCNA_00821 0.68 -0.8
883,746 + CCNA_00821 0.68 -1.4
883,746 + CCNA_00821 0.68 -2.2
883,746 + CCNA_00821 0.68 -1.7
883,751 + CCNA_00821 0.69 -2.1
883,754 - CCNA_00821 0.70 -0.3
883,770 + CCNA_00821 0.73 +0.1
883,778 - CCNA_00821 0.75 +0.3
883,778 - CCNA_00821 0.75 -3.2
883,778 - CCNA_00821 0.75 -1.4
883,779 - CCNA_00821 0.75 -1.8
883,783 - CCNA_00821 0.76 +0.9
883,807 - CCNA_00821 0.82 -2.1
883,818 + CCNA_00821 0.84 -0.1
883,834 + CCNA_00821 0.88 +0.1
883,877 + -0.7
883,877 + -2.3
883,877 + -0.2
883,899 + +1.5
883,907 - -1.2
883,907 - -0.6
883,907 - -0.2
883,947 - -1.6
883,951 + +0.1
883,958 + -0.7
883,958 + -0.1
883,958 + +0.7
883,958 + -0.2
883,966 - +0.8
883,966 - +2.0
883,966 - +0.2
883,966 - +1.1
884,001 + CCNA_00822 0.12 +0.3
884,001 + CCNA_00822 0.12 +4.3
884,001 + CCNA_00822 0.12 -1.0
884,001 + CCNA_00822 0.12 -1.5
884,001 + CCNA_00822 0.12 +2.0
884,001 + CCNA_00822 0.12 +0.1
884,001 + CCNA_00822 0.12 +0.5
884,001 + CCNA_00822 0.12 +0.9
884,009 - CCNA_00822 0.14 -0.5
884,009 - CCNA_00822 0.14 -0.2
884,009 - CCNA_00822 0.14 -0.5
884,009 - CCNA_00822 0.14 +0.2
884,009 - CCNA_00822 0.14 +0.1
884,009 - CCNA_00822 0.14 -0.1
884,047 - CCNA_00822 0.25 -1.0
884,049 + CCNA_00822 0.26 -2.1
884,052 - CCNA_00822 0.26 +0.4
884,052 - CCNA_00822 0.26 +0.3
884,052 - CCNA_00822 0.26 +0.3
884,061 + CCNA_00822 0.29 -1.7
884,074 + CCNA_00822 0.33 -1.1
884,082 - CCNA_00822 0.35 +0.9
884,101 - CCNA_00822 0.41 -0.1
884,102 + CCNA_00822 0.41 +1.0
884,107 + CCNA_00822 0.42 -0.0
884,110 - CCNA_00822 0.43 -0.7
884,115 - CCNA_00822 0.45 +0.4
884,117 - CCNA_00822 0.45 +0.2
884,117 - CCNA_00822 0.45 -1.0
884,122 - CCNA_00822 0.47 +0.1
884,122 - CCNA_00822 0.47 -0.2
884,154 - CCNA_00822 0.56 +1.0
884,154 - CCNA_00822 0.56 +1.2
884,163 + CCNA_00822 0.59 -0.6
884,171 - CCNA_00822 0.61 -0.9
884,171 - CCNA_00822 0.61 -1.7
884,203 - CCNA_00822 0.70 -1.4
884,212 - CCNA_00822 0.73 -0.5
884,243 - CCNA_00822 0.82 +1.1
884,243 - CCNA_00822 0.82 -0.7
884,255 + CCNA_00822 0.85 -2.4
884,255 + CCNA_00822 0.85 -1.7
884,263 - CCNA_00822 0.88 +0.9
884,263 - CCNA_00822 0.88 -0.8
884,263 - CCNA_00822 0.88 -0.7
884,296 + -1.3
884,296 + -0.3
884,304 - -0.0
884,304 - +0.0
884,309 - -0.5
884,348 - +0.2
884,348 - +0.2
884,354 - +0.7
884,354 - +0.3
884,369 - -0.5
884,389 + +1.3
884,389 + +0.7
884,389 + -1.1
884,389 + -0.8
884,389 + -2.5
884,389 + -0.4
884,397 - +1.1
884,398 + -0.4
884,398 + +0.1
884,399 + -0.0
884,399 + -0.7
884,408 + +2.2
884,416 - +0.3
884,421 - +0.1
884,435 - +0.4
884,455 - -2.0
884,463 + -2.0
884,518 - +0.3
884,539 + CCNA_00823 0.12 +1.0
884,562 - -2.6
884,576 - +1.2
884,590 - -1.3
884,666 + -2.3
884,669 - +0.6
884,669 - -2.0
884,738 + +0.3
884,789 + -2.0
884,814 + -3.5
884,821 + -1.0
884,847 - -1.0
884,848 - +0.9
884,877 + -1.0

Or see this region's nucleotide sequence