Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00419

Experiment: PYE with Vancomycin 0.007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00416 and CCNA_00417 are separated by 3 nucleotidesCCNA_00417 and CCNA_00419 are separated by 234 nucleotidesCCNA_00419 and CCNA_00420 are separated by 64 nucleotidesCCNA_00420 and CCNA_00421 overlap by 4 nucleotides CCNA_00416: CCNA_00416 - hypothetical protein, at 429,725 to 430,123 _00416 CCNA_00417: CCNA_00417 - hypothetical protein, at 430,127 to 430,498 _00417 CCNA_00419: CCNA_00419 - fasciclin domain cell surface protein, at 430,733 to 431,269 _00419 CCNA_00420: CCNA_00420 - hypothetical protein, at 431,334 to 431,885 _00420 CCNA_00421: CCNA_00421 - dihydroneopterin aldolase, at 431,882 to 432,286 _00421 Position (kb) 430 431 432Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 429.735 kb on - strandat 429.779 kb on - strand, within CCNA_00416at 429.827 kb on - strand, within CCNA_00416at 429.845 kb on + strand, within CCNA_00416at 429.872 kb on + strand, within CCNA_00416at 429.907 kb on - strand, within CCNA_00416at 429.917 kb on - strand, within CCNA_00416at 429.929 kb on - strand, within CCNA_00416at 429.931 kb on + strand, within CCNA_00416at 429.931 kb on + strand, within CCNA_00416at 429.956 kb on + strand, within CCNA_00416at 429.961 kb on - strand, within CCNA_00416at 429.961 kb on - strand, within CCNA_00416at 429.962 kb on - strand, within CCNA_00416at 429.962 kb on - strand, within CCNA_00416at 429.974 kb on - strand, within CCNA_00416at 429.974 kb on - strand, within CCNA_00416at 429.976 kb on + strand, within CCNA_00416at 429.976 kb on + strand, within CCNA_00416at 429.984 kb on - strand, within CCNA_00416at 430.009 kb on - strand, within CCNA_00416at 430.025 kb on + strand, within CCNA_00416at 430.025 kb on + strand, within CCNA_00416at 430.033 kb on - strand, within CCNA_00416at 430.051 kb on - strand, within CCNA_00416at 430.066 kb on - strand, within CCNA_00416at 430.067 kb on - strand, within CCNA_00416at 430.074 kb on + strand, within CCNA_00416at 430.081 kb on - strand, within CCNA_00416at 430.085 kb on + strandat 430.103 kb on + strandat 430.124 kb on + strandat 430.132 kb on - strandat 430.133 kb on - strandat 430.133 kb on - strandat 430.147 kb on + strandat 430.147 kb on - strandat 430.147 kb on - strandat 430.152 kb on + strandat 430.152 kb on + strandat 430.152 kb on + strandat 430.157 kb on + strandat 430.160 kb on - strandat 430.160 kb on - strandat 430.160 kb on - strandat 430.160 kb on - strandat 430.160 kb on - strandat 430.160 kb on - strandat 430.207 kb on + strand, within CCNA_00417at 430.207 kb on + strand, within CCNA_00417at 430.207 kb on - strand, within CCNA_00417at 430.209 kb on - strand, within CCNA_00417at 430.249 kb on - strand, within CCNA_00417at 430.256 kb on + strand, within CCNA_00417at 430.263 kb on + strand, within CCNA_00417at 430.263 kb on + strandat 430.266 kb on - strand, within CCNA_00417at 430.269 kb on - strand, within CCNA_00417at 430.271 kb on - strand, within CCNA_00417at 430.299 kb on - strand, within CCNA_00417at 430.315 kb on + strand, within CCNA_00417at 430.319 kb on - strand, within CCNA_00417at 430.361 kb on + strand, within CCNA_00417at 430.374 kb on - strand, within CCNA_00417at 430.385 kb on + strand, within CCNA_00417at 430.436 kb on + strand, within CCNA_00417at 430.436 kb on + strand, within CCNA_00417at 430.444 kb on - strand, within CCNA_00417at 430.486 kb on - strandat 430.501 kb on - strandat 430.510 kb on + strandat 430.548 kb on - strandat 430.577 kb on + strandat 430.664 kb on + strandat 430.672 kb on - strandat 430.679 kb on + strandat 430.697 kb on - strandat 430.697 kb on - strandat 430.697 kb on - strandat 430.704 kb on + strandat 430.723 kb on + strandat 430.728 kb on + strandat 430.740 kb on + strandat 430.753 kb on - strandat 430.793 kb on + strand, within CCNA_00419at 430.813 kb on + strand, within CCNA_00419at 430.823 kb on + strand, within CCNA_00419at 430.861 kb on + strand, within CCNA_00419at 430.863 kb on + strand, within CCNA_00419at 430.876 kb on - strand, within CCNA_00419at 430.898 kb on - strand, within CCNA_00419at 430.900 kb on + strand, within CCNA_00419at 430.900 kb on + strand, within CCNA_00419at 430.900 kb on + strand, within CCNA_00419at 430.905 kb on + strand, within CCNA_00419at 430.908 kb on - strand, within CCNA_00419at 430.912 kb on + strand, within CCNA_00419at 430.927 kb on + strand, within CCNA_00419at 430.935 kb on - strand, within CCNA_00419at 430.977 kb on + strand, within CCNA_00419at 430.977 kb on + strand, within CCNA_00419at 430.982 kb on + strand, within CCNA_00419at 430.982 kb on + strand, within CCNA_00419at 430.982 kb on + strand, within CCNA_00419at 430.982 kb on + strand, within CCNA_00419at 430.982 kb on + strand, within CCNA_00419at 430.982 kb on + strand, within CCNA_00419at 430.989 kb on + strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 431.005 kb on + strand, within CCNA_00419at 431.013 kb on - strand, within CCNA_00419at 431.027 kb on + strand, within CCNA_00419at 431.027 kb on + strand, within CCNA_00419at 431.035 kb on - strand, within CCNA_00419at 431.035 kb on - strand, within CCNA_00419at 431.047 kb on + strand, within CCNA_00419at 431.056 kb on + strand, within CCNA_00419at 431.063 kb on + strand, within CCNA_00419at 431.068 kb on + strand, within CCNA_00419at 431.069 kb on + strand, within CCNA_00419at 431.077 kb on - strand, within CCNA_00419at 431.084 kb on + strand, within CCNA_00419at 431.092 kb on - strand, within CCNA_00419at 431.116 kb on - strand, within CCNA_00419at 431.134 kb on + strand, within CCNA_00419at 431.162 kb on + strand, within CCNA_00419at 431.162 kb on + strand, within CCNA_00419at 431.248 kb on - strandat 431.287 kb on + strandat 431.287 kb on + strandat 431.287 kb on + strandat 431.287 kb on + strandat 431.295 kb on - strandat 431.295 kb on - strandat 431.366 kb on + strandat 431.366 kb on + strandat 431.374 kb on - strandat 431.402 kb on - strand, within CCNA_00420at 431.402 kb on - strand, within CCNA_00420at 431.402 kb on - strand, within CCNA_00420at 431.435 kb on - strand, within CCNA_00420at 431.444 kb on + strand, within CCNA_00420at 431.444 kb on + strand, within CCNA_00420at 431.444 kb on + strand, within CCNA_00420at 431.444 kb on + strand, within CCNA_00420at 431.444 kb on + strand, within CCNA_00420at 431.444 kb on + strand, within CCNA_00420at 431.444 kb on + strand, within CCNA_00420at 431.452 kb on - strand, within CCNA_00420at 431.473 kb on - strand, within CCNA_00420at 431.473 kb on - strand, within CCNA_00420at 431.490 kb on + strand, within CCNA_00420at 431.490 kb on + strand, within CCNA_00420at 431.498 kb on - strand, within CCNA_00420at 431.498 kb on - strand, within CCNA_00420at 431.529 kb on + strand, within CCNA_00420at 431.529 kb on + strand, within CCNA_00420at 431.529 kb on + strand, within CCNA_00420at 431.529 kb on + strand, within CCNA_00420at 431.529 kb on + strand, within CCNA_00420at 431.531 kb on - strand, within CCNA_00420at 431.534 kb on + strand, within CCNA_00420at 431.537 kb on - strand, within CCNA_00420at 431.537 kb on - strand, within CCNA_00420at 431.537 kb on - strand, within CCNA_00420at 431.537 kb on - strand, within CCNA_00420at 431.539 kb on + strand, within CCNA_00420at 431.539 kb on + strand, within CCNA_00420at 431.545 kb on + strand, within CCNA_00420at 431.556 kb on + strand, within CCNA_00420at 431.568 kb on - strand, within CCNA_00420at 431.575 kb on + strand, within CCNA_00420at 431.593 kb on + strand, within CCNA_00420at 431.593 kb on - strand, within CCNA_00420at 431.594 kb on - strand, within CCNA_00420at 431.598 kb on - strand, within CCNA_00420at 431.613 kb on + strand, within CCNA_00420at 431.621 kb on - strand, within CCNA_00420at 431.621 kb on - strand, within CCNA_00420at 431.662 kb on + strand, within CCNA_00420at 431.670 kb on - strand, within CCNA_00420at 431.670 kb on - strand, within CCNA_00420at 431.679 kb on + strand, within CCNA_00420at 431.757 kb on + strand, within CCNA_00420at 431.842 kb on + strandat 431.842 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Vancomycin 0.007 mg/ml
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429,735 - +0.4
429,779 - CCNA_00416 0.14 -0.8
429,827 - CCNA_00416 0.26 -1.4
429,845 + CCNA_00416 0.30 -0.0
429,872 + CCNA_00416 0.37 -0.7
429,907 - CCNA_00416 0.46 -1.8
429,917 - CCNA_00416 0.48 -0.1
429,929 - CCNA_00416 0.51 -1.2
429,931 + CCNA_00416 0.52 +0.2
429,931 + CCNA_00416 0.52 -1.8
429,956 + CCNA_00416 0.58 -0.2
429,961 - CCNA_00416 0.59 -0.3
429,961 - CCNA_00416 0.59 -0.6
429,962 - CCNA_00416 0.59 -0.0
429,962 - CCNA_00416 0.59 +0.1
429,974 - CCNA_00416 0.62 -0.9
429,974 - CCNA_00416 0.62 -0.5
429,976 + CCNA_00416 0.63 +0.9
429,976 + CCNA_00416 0.63 -0.5
429,984 - CCNA_00416 0.65 +1.7
430,009 - CCNA_00416 0.71 +0.6
430,025 + CCNA_00416 0.75 +0.4
430,025 + CCNA_00416 0.75 -0.8
430,033 - CCNA_00416 0.77 +0.3
430,051 - CCNA_00416 0.82 +0.7
430,066 - CCNA_00416 0.85 -0.5
430,067 - CCNA_00416 0.86 -0.5
430,074 + CCNA_00416 0.87 -0.3
430,081 - CCNA_00416 0.89 -1.1
430,085 + -0.5
430,103 + -1.8
430,124 + +1.1
430,132 - -0.8
430,133 - -0.7
430,133 - +0.9
430,147 + -1.4
430,147 - -3.6
430,147 - -0.1
430,152 + -0.3
430,152 + -0.3
430,152 + -1.9
430,157 + -1.3
430,160 - +1.1
430,160 - -1.1
430,160 - -1.3
430,160 - -1.7
430,160 - +0.8
430,160 - +0.2
430,207 + CCNA_00417 0.22 -0.6
430,207 + CCNA_00417 0.22 -2.1
430,207 - CCNA_00417 0.22 -0.8
430,209 - CCNA_00417 0.22 +0.4
430,249 - CCNA_00417 0.33 -0.6
430,256 + CCNA_00417 0.35 -1.7
430,263 + CCNA_00417 0.37 -1.2
430,263 + +3.7
430,266 - CCNA_00417 0.37 -0.5
430,269 - CCNA_00417 0.38 -1.1
430,271 - CCNA_00417 0.39 -0.4
430,299 - CCNA_00417 0.46 -2.5
430,315 + CCNA_00417 0.51 -0.2
430,319 - CCNA_00417 0.52 -0.4
430,361 + CCNA_00417 0.63 -1.1
430,374 - CCNA_00417 0.66 -1.7
430,385 + CCNA_00417 0.69 -1.0
430,436 + CCNA_00417 0.83 +1.4
430,436 + CCNA_00417 0.83 -0.5
430,444 - CCNA_00417 0.85 +0.5
430,486 - -0.4
430,501 - -0.8
430,510 + -1.2
430,548 - -0.0
430,577 + -1.3
430,664 + -2.1
430,672 - -0.6
430,679 + +0.1
430,697 - +0.4
430,697 - +0.4
430,697 - -0.8
430,704 + -1.5
430,723 + +1.5
430,728 + +1.1
430,740 + -3.3
430,753 - -0.3
430,793 + CCNA_00419 0.11 -0.8
430,813 + CCNA_00419 0.15 +0.4
430,823 + CCNA_00419 0.17 +0.4
430,861 + CCNA_00419 0.24 -1.8
430,863 + CCNA_00419 0.24 -1.4
430,876 - CCNA_00419 0.27 +0.1
430,898 - CCNA_00419 0.31 +0.8
430,900 + CCNA_00419 0.31 -1.4
430,900 + CCNA_00419 0.31 -1.4
430,900 + CCNA_00419 0.31 +2.2
430,905 + CCNA_00419 0.32 +0.6
430,908 - CCNA_00419 0.33 -1.9
430,912 + CCNA_00419 0.33 +2.0
430,927 + CCNA_00419 0.36 +0.4
430,935 - CCNA_00419 0.38 -1.6
430,977 + CCNA_00419 0.45 +1.0
430,977 + CCNA_00419 0.45 -1.3
430,982 + CCNA_00419 0.46 +0.6
430,982 + CCNA_00419 0.46 -1.0
430,982 + CCNA_00419 0.46 -1.6
430,982 + CCNA_00419 0.46 +0.7
430,982 + CCNA_00419 0.46 -2.8
430,982 + CCNA_00419 0.46 +0.2
430,989 + CCNA_00419 0.48 +0.4
430,990 - CCNA_00419 0.48 -1.6
430,990 - CCNA_00419 0.48 -0.8
430,990 - CCNA_00419 0.48 -0.2
430,990 - CCNA_00419 0.48 -1.6
430,990 - CCNA_00419 0.48 -1.7
430,990 - CCNA_00419 0.48 -0.4
430,990 - CCNA_00419 0.48 -2.0
430,990 - CCNA_00419 0.48 -1.0
430,990 - CCNA_00419 0.48 -2.1
431,005 + CCNA_00419 0.51 -0.8
431,013 - CCNA_00419 0.52 -2.5
431,027 + CCNA_00419 0.55 -1.6
431,027 + CCNA_00419 0.55 -0.8
431,035 - CCNA_00419 0.56 -1.4
431,035 - CCNA_00419 0.56 -1.2
431,047 + CCNA_00419 0.58 -1.8
431,056 + CCNA_00419 0.60 -0.9
431,063 + CCNA_00419 0.61 +0.2
431,068 + CCNA_00419 0.62 -0.8
431,069 + CCNA_00419 0.63 +0.2
431,077 - CCNA_00419 0.64 -0.1
431,084 + CCNA_00419 0.65 +0.2
431,092 - CCNA_00419 0.67 +1.2
431,116 - CCNA_00419 0.71 -0.1
431,134 + CCNA_00419 0.75 -0.7
431,162 + CCNA_00419 0.80 -1.4
431,162 + CCNA_00419 0.80 -2.0
431,248 - +1.7
431,287 + +1.3
431,287 + +0.5
431,287 + +0.9
431,287 + +0.6
431,295 - +2.1
431,295 - -0.5
431,366 + -0.9
431,366 + -2.4
431,374 - -1.4
431,402 - CCNA_00420 0.12 +0.0
431,402 - CCNA_00420 0.12 +0.3
431,402 - CCNA_00420 0.12 -0.6
431,435 - CCNA_00420 0.18 -0.2
431,444 + CCNA_00420 0.20 -0.1
431,444 + CCNA_00420 0.20 -2.1
431,444 + CCNA_00420 0.20 +0.9
431,444 + CCNA_00420 0.20 -0.1
431,444 + CCNA_00420 0.20 +0.1
431,444 + CCNA_00420 0.20 -0.7
431,444 + CCNA_00420 0.20 +0.2
431,452 - CCNA_00420 0.21 -0.5
431,473 - CCNA_00420 0.25 -0.1
431,473 - CCNA_00420 0.25 -0.5
431,490 + CCNA_00420 0.28 -0.0
431,490 + CCNA_00420 0.28 -0.6
431,498 - CCNA_00420 0.30 -0.7
431,498 - CCNA_00420 0.30 -1.0
431,529 + CCNA_00420 0.35 -0.8
431,529 + CCNA_00420 0.35 +1.4
431,529 + CCNA_00420 0.35 -0.7
431,529 + CCNA_00420 0.35 +1.0
431,529 + CCNA_00420 0.35 -1.5
431,531 - CCNA_00420 0.36 -1.3
431,534 + CCNA_00420 0.36 -0.5
431,537 - CCNA_00420 0.37 +0.8
431,537 - CCNA_00420 0.37 +2.0
431,537 - CCNA_00420 0.37 +0.1
431,537 - CCNA_00420 0.37 -0.8
431,539 + CCNA_00420 0.37 -1.9
431,539 + CCNA_00420 0.37 -1.0
431,545 + CCNA_00420 0.38 +0.8
431,556 + CCNA_00420 0.40 -0.8
431,568 - CCNA_00420 0.42 +0.2
431,575 + CCNA_00420 0.44 -0.9
431,593 + CCNA_00420 0.47 -1.2
431,593 - CCNA_00420 0.47 -1.9
431,594 - CCNA_00420 0.47 -0.5
431,598 - CCNA_00420 0.48 +0.2
431,613 + CCNA_00420 0.51 -2.7
431,621 - CCNA_00420 0.52 +0.7
431,621 - CCNA_00420 0.52 -0.4
431,662 + CCNA_00420 0.59 +0.1
431,670 - CCNA_00420 0.61 -0.7
431,670 - CCNA_00420 0.61 +0.2
431,679 + CCNA_00420 0.62 -0.5
431,757 + CCNA_00420 0.77 -1.5
431,842 + +0.7
431,842 + -1.5

Or see this region's nucleotide sequence