Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00184

Experiment: PYE with Vancomycin 0.007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00182 and CCNA_00183 are separated by 109 nucleotidesCCNA_00183 and CCNA_00184 are separated by 58 nucleotidesCCNA_00184 and CCNA_00185 are separated by 17 nucleotides CCNA_00182: CCNA_00182 - type II secretion pathway protein N, at 195,424 to 196,140 _00182 CCNA_00183: CCNA_00183 - type II secretory pathway, prepilin signal peptidase, at 196,250 to 197,011 _00183 CCNA_00184: CCNA_00184 - hypothetical protein, at 197,070 to 197,267 _00184 CCNA_00185: CCNA_00185 - TonB-dependent receptor, at 197,285 to 199,810 _00185 Position (kb) 197 198Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 196.114 kb on + strandat 196.246 kb on + strandat 196.259 kb on - strandat 196.261 kb on - strandat 196.275 kb on + strandat 196.275 kb on + strandat 196.275 kb on + strandat 196.278 kb on - strandat 196.283 kb on - strandat 196.361 kb on + strand, within CCNA_00183at 196.361 kb on + strand, within CCNA_00183at 196.362 kb on - strand, within CCNA_00183at 196.369 kb on - strand, within CCNA_00183at 196.369 kb on - strand, within CCNA_00183at 196.403 kb on + strand, within CCNA_00183at 196.406 kb on - strand, within CCNA_00183at 196.406 kb on - strand, within CCNA_00183at 196.408 kb on + strand, within CCNA_00183at 196.462 kb on - strand, within CCNA_00183at 196.478 kb on - strand, within CCNA_00183at 196.500 kb on + strand, within CCNA_00183at 196.500 kb on + strand, within CCNA_00183at 196.500 kb on + strand, within CCNA_00183at 196.511 kb on - strand, within CCNA_00183at 196.530 kb on - strand, within CCNA_00183at 196.553 kb on + strand, within CCNA_00183at 196.553 kb on + strand, within CCNA_00183at 196.553 kb on + strand, within CCNA_00183at 196.576 kb on - strand, within CCNA_00183at 196.619 kb on + strand, within CCNA_00183at 196.619 kb on + strand, within CCNA_00183at 196.632 kb on - strand, within CCNA_00183at 196.656 kb on + strand, within CCNA_00183at 196.699 kb on - strand, within CCNA_00183at 196.772 kb on - strand, within CCNA_00183at 196.776 kb on + strand, within CCNA_00183at 196.779 kb on - strand, within CCNA_00183at 196.784 kb on - strand, within CCNA_00183at 196.814 kb on - strand, within CCNA_00183at 196.814 kb on - strand, within CCNA_00183at 196.833 kb on - strand, within CCNA_00183at 196.851 kb on + strand, within CCNA_00183at 196.868 kb on - strand, within CCNA_00183at 196.901 kb on - strand, within CCNA_00183at 196.913 kb on - strand, within CCNA_00183at 196.989 kb on + strandat 196.989 kb on + strandat 196.997 kb on - strandat 196.997 kb on - strandat 196.997 kb on - strandat 196.997 kb on - strandat 196.997 kb on - strandat 197.014 kb on - strandat 197.015 kb on - strandat 197.017 kb on + strandat 197.027 kb on + strandat 197.027 kb on + strandat 197.035 kb on - strandat 197.043 kb on + strandat 197.043 kb on + strandat 197.051 kb on - strandat 197.051 kb on - strandat 197.099 kb on + strand, within CCNA_00184at 197.119 kb on - strand, within CCNA_00184at 197.121 kb on + strand, within CCNA_00184at 197.129 kb on - strand, within CCNA_00184at 197.173 kb on - strand, within CCNA_00184at 197.173 kb on - strand, within CCNA_00184at 197.190 kb on + strand, within CCNA_00184at 197.190 kb on + strand, within CCNA_00184at 197.190 kb on + strand, within CCNA_00184at 197.198 kb on - strand, within CCNA_00184at 197.198 kb on - strand, within CCNA_00184at 197.198 kb on - strand, within CCNA_00184at 197.225 kb on + strand, within CCNA_00184at 197.225 kb on + strand, within CCNA_00184at 197.233 kb on + strand, within CCNA_00184at 197.247 kb on + strand, within CCNA_00184at 197.255 kb on - strandat 197.261 kb on + strandat 197.262 kb on + strandat 197.270 kb on - strandat 197.270 kb on - strandat 197.270 kb on - strandat 197.270 kb on - strandat 197.280 kb on - strandat 197.302 kb on + strandat 197.308 kb on + strandat 197.308 kb on + strandat 197.310 kb on + strandat 197.316 kb on - strandat 197.316 kb on - strandat 197.318 kb on - strandat 197.365 kb on - strandat 197.400 kb on + strandat 197.408 kb on + strandat 197.422 kb on - strandat 197.431 kb on + strandat 197.431 kb on - strandat 197.444 kb on - strandat 197.476 kb on + strandat 197.477 kb on - strandat 197.477 kb on - strandat 197.482 kb on - strandat 197.486 kb on + strandat 197.486 kb on + strandat 197.486 kb on + strandat 197.489 kb on - strandat 197.494 kb on - strandat 197.506 kb on + strandat 197.519 kb on - strandat 197.547 kb on + strand, within CCNA_00185at 197.547 kb on + strand, within CCNA_00185at 197.556 kb on - strand, within CCNA_00185at 197.587 kb on - strand, within CCNA_00185at 197.594 kb on - strand, within CCNA_00185at 197.674 kb on - strand, within CCNA_00185at 197.706 kb on - strand, within CCNA_00185at 197.734 kb on + strand, within CCNA_00185at 197.829 kb on + strandat 197.853 kb on + strand, within CCNA_00185at 197.853 kb on + strand, within CCNA_00185at 197.873 kb on + strand, within CCNA_00185at 197.881 kb on - strand, within CCNA_00185at 197.919 kb on + strand, within CCNA_00185at 197.926 kb on - strand, within CCNA_00185at 197.940 kb on + strand, within CCNA_00185at 197.940 kb on + strand, within CCNA_00185at 197.942 kb on + strand, within CCNA_00185at 197.950 kb on + strand, within CCNA_00185at 197.950 kb on + strand, within CCNA_00185at 197.950 kb on + strand, within CCNA_00185at 197.950 kb on - strand, within CCNA_00185at 197.950 kb on - strand, within CCNA_00185at 197.958 kb on - strand, within CCNA_00185at 197.958 kb on - strand, within CCNA_00185at 197.958 kb on - strand, within CCNA_00185at 197.988 kb on - strand, within CCNA_00185at 198.000 kb on + strand, within CCNA_00185at 198.000 kb on + strand, within CCNA_00185at 198.042 kb on + strand, within CCNA_00185at 198.099 kb on + strand, within CCNA_00185at 198.101 kb on + strand, within CCNA_00185at 198.113 kb on + strand, within CCNA_00185at 198.128 kb on + strand, within CCNA_00185at 198.136 kb on - strand, within CCNA_00185at 198.164 kb on - strand, within CCNA_00185at 198.166 kb on + strand, within CCNA_00185at 198.186 kb on - strand, within CCNA_00185at 198.206 kb on + strand, within CCNA_00185at 198.206 kb on + strand, within CCNA_00185at 198.206 kb on + strand, within CCNA_00185at 198.216 kb on + strand, within CCNA_00185at 198.216 kb on + strand, within CCNA_00185at 198.223 kb on - strand, within CCNA_00185at 198.224 kb on - strand, within CCNA_00185at 198.265 kb on + strand, within CCNA_00185at 198.265 kb on + strand, within CCNA_00185

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Vancomycin 0.007 mg/ml
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196,114 + -1.1
196,246 + -1.1
196,259 - -2.3
196,261 - -0.0
196,275 + +0.0
196,275 + -2.5
196,275 + -0.3
196,278 - +1.3
196,283 - -1.0
196,361 + CCNA_00183 0.15 -0.8
196,361 + CCNA_00183 0.15 -0.2
196,362 - CCNA_00183 0.15 -1.0
196,369 - CCNA_00183 0.16 +0.8
196,369 - CCNA_00183 0.16 +1.3
196,403 + CCNA_00183 0.20 +0.0
196,406 - CCNA_00183 0.20 +1.0
196,406 - CCNA_00183 0.20 -1.5
196,408 + CCNA_00183 0.21 +0.7
196,462 - CCNA_00183 0.28 -0.1
196,478 - CCNA_00183 0.30 +0.1
196,500 + CCNA_00183 0.33 -0.8
196,500 + CCNA_00183 0.33 -0.4
196,500 + CCNA_00183 0.33 -0.8
196,511 - CCNA_00183 0.34 +1.1
196,530 - CCNA_00183 0.37 -0.4
196,553 + CCNA_00183 0.40 +1.7
196,553 + CCNA_00183 0.40 -0.7
196,553 + CCNA_00183 0.40 -1.5
196,576 - CCNA_00183 0.43 -0.3
196,619 + CCNA_00183 0.48 -2.6
196,619 + CCNA_00183 0.48 +0.0
196,632 - CCNA_00183 0.50 -0.3
196,656 + CCNA_00183 0.53 -1.1
196,699 - CCNA_00183 0.59 +0.5
196,772 - CCNA_00183 0.69 -1.3
196,776 + CCNA_00183 0.69 -0.1
196,779 - CCNA_00183 0.69 +0.9
196,784 - CCNA_00183 0.70 -1.4
196,814 - CCNA_00183 0.74 -0.9
196,814 - CCNA_00183 0.74 -0.0
196,833 - CCNA_00183 0.77 -0.6
196,851 + CCNA_00183 0.79 +0.3
196,868 - CCNA_00183 0.81 -1.1
196,901 - CCNA_00183 0.85 -0.8
196,913 - CCNA_00183 0.87 -0.6
196,989 + -1.6
196,989 + +1.6
196,997 - +0.9
196,997 - -0.6
196,997 - -1.0
196,997 - -0.8
196,997 - -0.5
197,014 - +1.3
197,015 - +1.0
197,017 + -1.3
197,027 + +0.2
197,027 + +0.2
197,035 - -0.3
197,043 + -0.2
197,043 + -1.6
197,051 - -0.6
197,051 - -0.6
197,099 + CCNA_00184 0.15 -2.2
197,119 - CCNA_00184 0.25 -0.3
197,121 + CCNA_00184 0.26 +0.1
197,129 - CCNA_00184 0.30 -2.0
197,173 - CCNA_00184 0.52 -2.0
197,173 - CCNA_00184 0.52 +0.4
197,190 + CCNA_00184 0.61 -2.4
197,190 + CCNA_00184 0.61 -1.1
197,190 + CCNA_00184 0.61 -3.1
197,198 - CCNA_00184 0.65 -1.9
197,198 - CCNA_00184 0.65 -0.7
197,198 - CCNA_00184 0.65 -0.2
197,225 + CCNA_00184 0.78 -1.7
197,225 + CCNA_00184 0.78 -1.1
197,233 + CCNA_00184 0.82 -1.3
197,247 + CCNA_00184 0.89 -3.0
197,255 - -0.1
197,261 + -0.6
197,262 + +0.8
197,270 - +0.8
197,270 - +0.4
197,270 - +0.8
197,270 - +1.2
197,280 - -0.6
197,302 + +0.0
197,308 + -1.2
197,308 + +0.8
197,310 + -0.6
197,316 - -0.5
197,316 - -0.3
197,318 - -1.0
197,365 - -1.2
197,400 + +0.2
197,408 + -0.0
197,422 - -0.0
197,431 + -2.2
197,431 - +0.1
197,444 - -1.8
197,476 + -1.1
197,477 - +1.0
197,477 - +1.8
197,482 - -1.9
197,486 + +1.0
197,486 + -0.4
197,486 + +0.3
197,489 - -2.2
197,494 - +0.2
197,506 + +0.9
197,519 - +0.3
197,547 + CCNA_00185 0.10 -1.3
197,547 + CCNA_00185 0.10 -0.8
197,556 - CCNA_00185 0.11 +1.8
197,587 - CCNA_00185 0.12 +0.3
197,594 - CCNA_00185 0.12 -2.1
197,674 - CCNA_00185 0.15 -0.8
197,706 - CCNA_00185 0.17 -1.2
197,734 + CCNA_00185 0.18 -0.7
197,829 + +1.6
197,853 + CCNA_00185 0.22 -1.7
197,853 + CCNA_00185 0.22 -0.6
197,873 + CCNA_00185 0.23 -0.3
197,881 - CCNA_00185 0.24 -1.2
197,919 + CCNA_00185 0.25 -0.1
197,926 - CCNA_00185 0.25 -1.2
197,940 + CCNA_00185 0.26 +0.5
197,940 + CCNA_00185 0.26 -0.1
197,942 + CCNA_00185 0.26 +0.8
197,950 + CCNA_00185 0.26 -2.2
197,950 + CCNA_00185 0.26 +0.6
197,950 + CCNA_00185 0.26 +1.3
197,950 - CCNA_00185 0.26 -1.3
197,950 - CCNA_00185 0.26 -2.1
197,958 - CCNA_00185 0.27 +0.0
197,958 - CCNA_00185 0.27 -1.0
197,958 - CCNA_00185 0.27 -0.5
197,988 - CCNA_00185 0.28 -0.8
198,000 + CCNA_00185 0.28 +0.6
198,000 + CCNA_00185 0.28 -0.8
198,042 + CCNA_00185 0.30 -0.3
198,099 + CCNA_00185 0.32 -0.6
198,101 + CCNA_00185 0.32 -0.6
198,113 + CCNA_00185 0.33 +0.8
198,128 + CCNA_00185 0.33 +0.4
198,136 - CCNA_00185 0.34 +0.2
198,164 - CCNA_00185 0.35 -0.1
198,166 + CCNA_00185 0.35 -0.2
198,186 - CCNA_00185 0.36 -1.1
198,206 + CCNA_00185 0.36 -1.5
198,206 + CCNA_00185 0.36 +0.3
198,206 + CCNA_00185 0.36 -1.3
198,216 + CCNA_00185 0.37 -0.6
198,216 + CCNA_00185 0.37 -0.8
198,223 - CCNA_00185 0.37 -2.7
198,224 - CCNA_00185 0.37 -0.8
198,265 + CCNA_00185 0.39 -0.1
198,265 + CCNA_00185 0.39 +0.3

Or see this region's nucleotide sequence