Experiment: PYE with Vancomycin 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00150 and CCNA_00151 are separated by 166 nucleotides CCNA_00151 and CCNA_00152 are separated by 139 nucleotides
CCNA_00150: CCNA_00150 - PDZ domain family protein, at 159,320 to 160,297
_00150
CCNA_00151: CCNA_00151 - ribonuclease PH, at 160,464 to 161,180
_00151
CCNA_00152: CCNA_00152 - winged helix-turn-helix transcription repressor HrcA, at 161,320 to 162,396
_00152
Position (kb) 160
161
162 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 159.520 kb on - strand, within CCNA_00150 at 159.531 kb on + strand, within CCNA_00150 at 159.536 kb on + strand, within CCNA_00150 at 159.613 kb on + strand, within CCNA_00150 at 159.613 kb on + strand, within CCNA_00150 at 159.619 kb on + strand, within CCNA_00150 at 159.621 kb on - strand, within CCNA_00150 at 159.651 kb on + strand, within CCNA_00150 at 159.683 kb on - strand, within CCNA_00150 at 159.721 kb on - strand, within CCNA_00150 at 159.756 kb on + strand, within CCNA_00150 at 159.758 kb on - strand, within CCNA_00150 at 159.761 kb on + strand, within CCNA_00150 at 159.769 kb on - strand, within CCNA_00150 at 159.769 kb on - strand, within CCNA_00150 at 159.769 kb on - strand, within CCNA_00150 at 159.769 kb on - strand, within CCNA_00150 at 159.776 kb on + strand, within CCNA_00150 at 159.809 kb on - strand, within CCNA_00150 at 159.821 kb on + strand, within CCNA_00150 at 159.874 kb on - strand, within CCNA_00150 at 159.978 kb on + strand, within CCNA_00150 at 159.990 kb on - strand, within CCNA_00150 at 159.995 kb on + strand, within CCNA_00150 at 160.013 kb on + strand, within CCNA_00150 at 160.018 kb on + strand, within CCNA_00150 at 160.026 kb on - strand, within CCNA_00150 at 160.026 kb on - strand, within CCNA_00150 at 160.056 kb on + strand, within CCNA_00150 at 160.116 kb on - strand, within CCNA_00150 at 160.121 kb on - strand, within CCNA_00150 at 160.154 kb on - strand at 160.172 kb on - strand, within CCNA_00150 at 160.172 kb on - strand, within CCNA_00150 at 160.176 kb on + strand, within CCNA_00150 at 160.190 kb on - strand, within CCNA_00150 at 160.203 kb on + strand at 160.211 kb on - strand at 160.215 kb on + strand at 160.220 kb on + strand at 160.238 kb on + strand at 160.241 kb on - strand at 160.246 kb on - strand at 160.259 kb on - strand at 160.300 kb on - strand at 160.304 kb on + strand at 160.304 kb on + strand at 160.304 kb on + strand at 160.304 kb on + strand at 160.305 kb on - strand at 160.312 kb on - strand at 160.312 kb on - strand at 160.314 kb on - strand at 160.314 kb on - strand at 160.329 kb on + strand at 160.337 kb on - strand at 160.396 kb on - strand at 160.405 kb on + strand at 160.406 kb on - strand at 160.406 kb on - strand at 160.413 kb on + strand at 160.426 kb on + strand at 160.455 kb on + strand at 160.455 kb on + strand at 160.455 kb on + strand at 160.456 kb on + strand at 160.463 kb on - strand at 160.463 kb on - strand at 160.463 kb on - strand at 160.463 kb on - strand at 160.463 kb on - strand at 160.480 kb on + strand at 160.511 kb on - strand at 160.520 kb on - strand at 160.571 kb on - strand, within CCNA_00151 at 160.571 kb on - strand, within CCNA_00151 at 160.605 kb on + strand, within CCNA_00151 at 160.641 kb on - strand, within CCNA_00151 at 160.646 kb on - strand, within CCNA_00151 at 160.675 kb on + strand, within CCNA_00151 at 160.675 kb on + strand, within CCNA_00151 at 160.675 kb on + strand, within CCNA_00151 at 160.683 kb on - strand, within CCNA_00151 at 160.683 kb on - strand, within CCNA_00151 at 160.683 kb on - strand, within CCNA_00151 at 160.683 kb on - strand, within CCNA_00151 at 160.683 kb on - strand, within CCNA_00151 at 160.683 kb on - strand, within CCNA_00151 at 160.683 kb on - strand, within CCNA_00151 at 160.699 kb on + strand, within CCNA_00151 at 160.726 kb on + strand, within CCNA_00151 at 160.734 kb on - strand, within CCNA_00151 at 160.755 kb on - strand, within CCNA_00151 at 160.761 kb on + strand at 160.774 kb on - strand, within CCNA_00151 at 160.780 kb on - strand, within CCNA_00151 at 160.796 kb on - strand, within CCNA_00151 at 160.848 kb on - strand, within CCNA_00151 at 160.864 kb on + strand, within CCNA_00151 at 160.873 kb on - strand, within CCNA_00151 at 160.940 kb on - strand, within CCNA_00151 at 160.989 kb on + strand, within CCNA_00151 at 160.999 kb on + strand, within CCNA_00151 at 160.999 kb on + strand, within CCNA_00151 at 161.002 kb on - strand, within CCNA_00151 at 161.007 kb on - strand, within CCNA_00151 at 161.025 kb on - strand, within CCNA_00151 at 161.046 kb on + strand, within CCNA_00151 at 161.054 kb on - strand, within CCNA_00151 at 161.054 kb on - strand, within CCNA_00151 at 161.067 kb on - strand, within CCNA_00151 at 161.072 kb on - strand, within CCNA_00151 at 161.079 kb on - strand, within CCNA_00151 at 161.089 kb on - strand, within CCNA_00151 at 161.104 kb on - strand, within CCNA_00151 at 161.106 kb on - strand, within CCNA_00151 at 161.135 kb on - strand at 161.135 kb on - strand at 161.143 kb on + strand at 161.143 kb on + strand at 161.151 kb on - strand at 161.151 kb on - strand at 161.161 kb on - strand at 161.187 kb on + strand at 161.187 kb on + strand at 161.195 kb on - strand at 161.205 kb on + strand at 161.221 kb on - strand at 161.221 kb on - strand at 161.221 kb on - strand at 161.244 kb on - strand at 161.277 kb on - strand at 161.323 kb on + strand at 161.328 kb on + strand at 161.328 kb on + strand at 161.331 kb on - strand at 161.333 kb on + strand at 161.336 kb on - strand at 161.336 kb on - strand at 161.336 kb on - strand at 161.341 kb on - strand at 161.348 kb on + strand at 161.354 kb on + strand at 161.354 kb on + strand at 161.362 kb on - strand at 161.362 kb on - strand at 161.384 kb on + strand at 161.400 kb on - strand at 161.412 kb on + strand at 161.412 kb on + strand at 161.426 kb on + strand at 161.450 kb on - strand, within CCNA_00152 at 161.452 kb on + strand, within CCNA_00152 at 161.513 kb on - strand, within CCNA_00152 at 161.515 kb on - strand, within CCNA_00152 at 161.516 kb on + strand, within CCNA_00152 at 161.552 kb on + strand, within CCNA_00152 at 161.685 kb on + strand, within CCNA_00152 at 161.685 kb on + strand, within CCNA_00152 at 161.704 kb on - strand, within CCNA_00152 at 161.705 kb on + strand, within CCNA_00152 at 161.710 kb on + strand, within CCNA_00152 at 161.713 kb on - strand, within CCNA_00152 at 161.760 kb on + strand, within CCNA_00152 at 161.782 kb on + strand, within CCNA_00152 at 161.817 kb on + strand, within CCNA_00152 at 161.841 kb on - strand, within CCNA_00152 at 161.841 kb on - strand, within CCNA_00152 at 161.866 kb on + strand, within CCNA_00152 at 161.929 kb on - strand, within CCNA_00152 at 161.959 kb on + strand, within CCNA_00152 at 161.967 kb on - strand, within CCNA_00152 at 162.025 kb on + strand, within CCNA_00152 at 162.064 kb on - strand, within CCNA_00152 at 162.075 kb on + strand, within CCNA_00152 at 162.122 kb on + strand, within CCNA_00152 at 162.140 kb on + strand, within CCNA_00152 at 162.140 kb on + strand, within CCNA_00152 at 162.147 kb on + strand, within CCNA_00152 at 162.171 kb on + strand, within CCNA_00152 at 162.171 kb on + strand, within CCNA_00152 at 162.171 kb on + strand, within CCNA_00152 at 162.171 kb on + strand, within CCNA_00152 at 162.179 kb on - strand, within CCNA_00152
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Vancomycin 0.007 mg/ml remove 159,520 - CCNA_00150 0.20 -0.2 159,531 + CCNA_00150 0.22 -2.5 159,536 + CCNA_00150 0.22 +0.7 159,613 + CCNA_00150 0.30 +0.7 159,613 + CCNA_00150 0.30 -1.1 159,619 + CCNA_00150 0.31 +0.8 159,621 - CCNA_00150 0.31 -1.0 159,651 + CCNA_00150 0.34 -0.6 159,683 - CCNA_00150 0.37 +0.2 159,721 - CCNA_00150 0.41 +1.3 159,756 + CCNA_00150 0.45 +0.8 159,758 - CCNA_00150 0.45 +2.6 159,761 + CCNA_00150 0.45 +0.5 159,769 - CCNA_00150 0.46 +0.8 159,769 - CCNA_00150 0.46 +0.2 159,769 - CCNA_00150 0.46 +2.0 159,769 - CCNA_00150 0.46 +0.7 159,776 + CCNA_00150 0.47 +0.9 159,809 - CCNA_00150 0.50 +0.3 159,821 + CCNA_00150 0.51 +0.4 159,874 - CCNA_00150 0.57 +0.2 159,978 + CCNA_00150 0.67 +0.8 159,990 - CCNA_00150 0.69 +1.8 159,995 + CCNA_00150 0.69 -0.8 160,013 + CCNA_00150 0.71 -0.3 160,018 + CCNA_00150 0.71 +0.2 160,026 - CCNA_00150 0.72 +0.2 160,026 - CCNA_00150 0.72 +1.0 160,056 + CCNA_00150 0.75 -1.7 160,116 - CCNA_00150 0.81 -0.2 160,121 - CCNA_00150 0.82 +0.5 160,154 - +3.5 160,172 - CCNA_00150 0.87 +0.5 160,172 - CCNA_00150 0.87 -1.6 160,176 + CCNA_00150 0.88 -0.9 160,190 - CCNA_00150 0.89 +0.9 160,203 + -0.7 160,211 - -0.0 160,215 + -1.4 160,220 + -1.0 160,238 + -1.1 160,241 - +0.5 160,246 - +0.4 160,259 - +0.5 160,300 - +0.2 160,304 + -0.7 160,304 + -0.9 160,304 + -1.0 160,304 + -1.0 160,305 - +0.8 160,312 - +0.5 160,312 - +1.1 160,314 - +0.6 160,314 - +0.1 160,329 + -0.4 160,337 - +0.9 160,396 - +0.5 160,405 + -0.6 160,406 - -0.1 160,406 - +0.2 160,413 + +1.3 160,426 + -1.1 160,455 + +0.3 160,455 + -1.6 160,455 + +0.1 160,456 + -2.0 160,463 - -0.4 160,463 - +0.7 160,463 - -0.4 160,463 - +0.1 160,463 - +0.1 160,480 + -1.6 160,511 - +1.0 160,520 - +1.1 160,571 - CCNA_00151 0.15 +1.2 160,571 - CCNA_00151 0.15 +0.9 160,605 + CCNA_00151 0.20 -0.3 160,641 - CCNA_00151 0.25 +1.0 160,646 - CCNA_00151 0.25 +2.9 160,675 + CCNA_00151 0.29 +1.5 160,675 + CCNA_00151 0.29 -1.5 160,675 + CCNA_00151 0.29 +0.8 160,683 - CCNA_00151 0.31 +1.1 160,683 - CCNA_00151 0.31 +0.9 160,683 - CCNA_00151 0.31 +1.1 160,683 - CCNA_00151 0.31 +0.4 160,683 - CCNA_00151 0.31 +2.0 160,683 - CCNA_00151 0.31 +0.5 160,683 - CCNA_00151 0.31 +1.8 160,699 + CCNA_00151 0.33 -0.9 160,726 + CCNA_00151 0.37 -0.5 160,734 - CCNA_00151 0.38 +0.2 160,755 - CCNA_00151 0.41 +0.3 160,761 + +1.5 160,774 - CCNA_00151 0.43 -0.1 160,780 - CCNA_00151 0.44 +1.6 160,796 - CCNA_00151 0.46 +0.5 160,848 - CCNA_00151 0.54 -0.0 160,864 + CCNA_00151 0.56 -1.4 160,873 - CCNA_00151 0.57 +0.5 160,940 - CCNA_00151 0.66 +0.5 160,989 + CCNA_00151 0.73 -1.2 160,999 + CCNA_00151 0.75 +1.2 160,999 + CCNA_00151 0.75 -2.4 161,002 - CCNA_00151 0.75 -0.3 161,007 - CCNA_00151 0.76 -0.2 161,025 - CCNA_00151 0.78 +1.0 161,046 + CCNA_00151 0.81 -1.8 161,054 - CCNA_00151 0.82 +0.5 161,054 - CCNA_00151 0.82 +0.5 161,067 - CCNA_00151 0.84 +0.7 161,072 - CCNA_00151 0.85 +0.6 161,079 - CCNA_00151 0.86 +0.0 161,089 - CCNA_00151 0.87 +0.3 161,104 - CCNA_00151 0.89 -0.4 161,106 - CCNA_00151 0.90 +1.0 161,135 - -1.1 161,135 - -0.2 161,143 + -1.0 161,143 + -1.4 161,151 - +0.9 161,151 - +0.9 161,161 - -2.2 161,187 + +1.5 161,187 + -0.4 161,195 - +1.9 161,205 + +0.5 161,221 - -0.4 161,221 - -0.0 161,221 - +0.4 161,244 - -1.2 161,277 - -0.9 161,323 + -1.1 161,328 + +0.3 161,328 + -0.7 161,331 - -0.3 161,333 + -0.2 161,336 - -0.6 161,336 - -1.9 161,336 - +1.8 161,341 - -0.4 161,348 + -0.7 161,354 + -0.9 161,354 + -0.2 161,362 - -1.2 161,362 - -1.0 161,384 + +0.9 161,400 - +0.4 161,412 + +0.4 161,412 + -1.3 161,426 + +0.9 161,450 - CCNA_00152 0.12 -0.8 161,452 + CCNA_00152 0.12 +0.5 161,513 - CCNA_00152 0.18 -0.7 161,515 - CCNA_00152 0.18 +0.2 161,516 + CCNA_00152 0.18 +0.5 161,552 + CCNA_00152 0.22 -1.3 161,685 + CCNA_00152 0.34 -0.4 161,685 + CCNA_00152 0.34 -0.1 161,704 - CCNA_00152 0.36 -1.5 161,705 + CCNA_00152 0.36 +0.2 161,710 + CCNA_00152 0.36 -0.9 161,713 - CCNA_00152 0.36 -3.4 161,760 + CCNA_00152 0.41 -1.8 161,782 + CCNA_00152 0.43 -0.2 161,817 + CCNA_00152 0.46 +0.3 161,841 - CCNA_00152 0.48 -0.1 161,841 - CCNA_00152 0.48 -1.1 161,866 + CCNA_00152 0.51 -0.5 161,929 - CCNA_00152 0.57 +0.1 161,959 + CCNA_00152 0.59 -0.0 161,967 - CCNA_00152 0.60 -0.5 162,025 + CCNA_00152 0.65 -0.1 162,064 - CCNA_00152 0.69 -0.7 162,075 + CCNA_00152 0.70 +0.1 162,122 + CCNA_00152 0.74 -1.8 162,140 + CCNA_00152 0.76 -1.7 162,140 + CCNA_00152 0.76 +1.9 162,147 + CCNA_00152 0.77 -0.2 162,171 + CCNA_00152 0.79 +0.1 162,171 + CCNA_00152 0.79 -0.4 162,171 + CCNA_00152 0.79 -0.7 162,171 + CCNA_00152 0.79 +1.6 162,179 - CCNA_00152 0.80 -1.4
Or see this region's nucleotide sequence