Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS36150

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS36145 and BPHYT_RS36150 are separated by 514 nucleotidesBPHYT_RS36150 and BPHYT_RS36155 are separated by 5 nucleotidesBPHYT_RS36155 and BPHYT_RS36160 are separated by 78 nucleotides BPHYT_RS36145: BPHYT_RS36145 - hypothetical protein, at 46,724 to 46,978 _RS36145 BPHYT_RS36150: BPHYT_RS36150 - hypothetical protein, at 47,493 to 47,726 _RS36150 BPHYT_RS36155: BPHYT_RS36155 - hypothetical protein, at 47,732 to 47,947 _RS36155 BPHYT_RS36160: BPHYT_RS36160 - hypothetical protein, at 48,026 to 48,514 _RS36160 Position (kb) 47 48Strain fitness (log2 ratio) -2 -1 0 1at 46.793 kb on + strand, within BPHYT_RS36145at 47.023 kb on + strandat 47.024 kb on - strandat 47.179 kb on + strandat 47.179 kb on + strandat 47.180 kb on - strandat 47.533 kb on + strand, within BPHYT_RS36150at 47.660 kb on + strand, within BPHYT_RS36150at 47.950 kb on - strandat 47.995 kb on + strandat 47.995 kb on + strandat 48.023 kb on - strandat 48.023 kb on - strandat 48.023 kb on - strandat 48.023 kb on - strandat 48.312 kb on - strand, within BPHYT_RS36160at 48.464 kb on - strand, within BPHYT_RS36160at 48.464 kb on - strand, within BPHYT_RS36160

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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46,793 + BPHYT_RS36145 0.27 -0.1
47,023 + -0.1
47,024 - -0.4
47,179 + -0.8
47,179 + +0.5
47,180 - -0.1
47,533 + BPHYT_RS36150 0.17 -2.0
47,660 + BPHYT_RS36150 0.71 -0.9
47,950 - -0.1
47,995 + -2.6
47,995 + +0.9
48,023 - +0.9
48,023 - -0.1
48,023 - +1.6
48,023 - +0.1
48,312 - BPHYT_RS36160 0.58 +0.6
48,464 - BPHYT_RS36160 0.90 -1.5
48,464 - BPHYT_RS36160 0.90 -0.0

Or see this region's nucleotide sequence