Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31715

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS31710 and BPHYT_RS31715 are separated by 133 nucleotidesBPHYT_RS31715 and BPHYT_RS31720 are separated by 362 nucleotides BPHYT_RS31710: BPHYT_RS31710 - porin, at 2,671,058 to 2,672,203 _RS31710 BPHYT_RS31715: BPHYT_RS31715 - branched-chain amino acid ABC transporter substrate-binding protein, at 2,672,337 to 2,673,479 _RS31715 BPHYT_RS31720: BPHYT_RS31720 - LysR family transcriptional regulator, at 2,673,842 to 2,674,771 _RS31720 Position (kb) 2672 2673 2674Strain fitness (log2 ratio) -2 -1 0 1at 2671.402 kb on + strand, within BPHYT_RS31710at 2671.451 kb on - strand, within BPHYT_RS31710at 2671.514 kb on + strand, within BPHYT_RS31710at 2671.628 kb on - strand, within BPHYT_RS31710at 2671.688 kb on - strand, within BPHYT_RS31710at 2671.689 kb on + strand, within BPHYT_RS31710at 2671.693 kb on + strand, within BPHYT_RS31710at 2672.380 kb on + strandat 2672.552 kb on - strand, within BPHYT_RS31715at 2672.834 kb on + strand, within BPHYT_RS31715at 2672.999 kb on - strand, within BPHYT_RS31715at 2673.525 kb on - strandat 2673.758 kb on - strandat 2673.770 kb on + strandat 2673.957 kb on - strand, within BPHYT_RS31720at 2674.240 kb on - strand, within BPHYT_RS31720

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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2,671,402 + BPHYT_RS31710 0.30 -2.7
2,671,451 - BPHYT_RS31710 0.34 -0.4
2,671,514 + BPHYT_RS31710 0.40 -0.1
2,671,628 - BPHYT_RS31710 0.50 +0.2
2,671,688 - BPHYT_RS31710 0.55 -1.5
2,671,689 + BPHYT_RS31710 0.55 +0.1
2,671,693 + BPHYT_RS31710 0.55 +0.1
2,672,380 + +1.0
2,672,552 - BPHYT_RS31715 0.19 -1.4
2,672,834 + BPHYT_RS31715 0.43 +0.5
2,672,999 - BPHYT_RS31715 0.58 +0.4
2,673,525 - +0.8
2,673,758 - +0.1
2,673,770 + -0.6
2,673,957 - BPHYT_RS31720 0.12 -1.9
2,674,240 - BPHYT_RS31720 0.43 +0.1

Or see this region's nucleotide sequence