Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29990

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS29985 and BPHYT_RS29990 overlap by 4 nucleotidesBPHYT_RS29990 and BPHYT_RS29995 are separated by 552 nucleotides BPHYT_RS29985: BPHYT_RS29985 - feruloyl esterase, at 2,280,934 to 2,282,604 _RS29985 BPHYT_RS29990: BPHYT_RS29990 - hypothetical protein, at 2,282,601 to 2,283,734 _RS29990 BPHYT_RS29995: BPHYT_RS29995 - acyltransferase, at 2,284,287 to 2,285,483 _RS29995 Position (kb) 2282 2283 2284Strain fitness (log2 ratio) -1 0 1 2at 2281.991 kb on + strand, within BPHYT_RS29985at 2282.230 kb on - strand, within BPHYT_RS29985at 2282.745 kb on - strand, within BPHYT_RS29990at 2283.091 kb on - strand, within BPHYT_RS29990at 2283.154 kb on - strand, within BPHYT_RS29990at 2283.527 kb on - strand, within BPHYT_RS29990at 2283.800 kb on - strandat 2283.855 kb on + strandat 2283.887 kb on + strandat 2283.996 kb on - strandat 2284.010 kb on + strandat 2284.041 kb on + strandat 2284.042 kb on - strandat 2284.642 kb on + strand, within BPHYT_RS29995at 2284.642 kb on + strand, within BPHYT_RS29995

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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2,281,991 + BPHYT_RS29985 0.63 +2.3
2,282,230 - BPHYT_RS29985 0.78 +0.3
2,282,745 - BPHYT_RS29990 0.13 +0.2
2,283,091 - BPHYT_RS29990 0.43 +0.5
2,283,154 - BPHYT_RS29990 0.49 +1.3
2,283,527 - BPHYT_RS29990 0.82 -0.0
2,283,800 - -0.3
2,283,855 + +0.3
2,283,887 + -1.0
2,283,996 - -0.5
2,284,010 + -1.2
2,284,041 + +0.0
2,284,042 - +1.4
2,284,642 + BPHYT_RS29995 0.30 +0.4
2,284,642 + BPHYT_RS29995 0.30 -0.6

Or see this region's nucleotide sequence