Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28825

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS28820 and BPHYT_RS28825 are separated by 86 nucleotidesBPHYT_RS28825 and BPHYT_RS28830 are separated by 260 nucleotides BPHYT_RS28820: BPHYT_RS28820 - MFS transporter, at 2,015,628 to 2,016,968 _RS28820 BPHYT_RS28825: BPHYT_RS28825 - methylmalonate-semialdehyde dehydrogenase, at 2,017,055 to 2,018,578 _RS28825 BPHYT_RS28830: BPHYT_RS28830 - LysR family transcriptional regulator, at 2,018,839 to 2,019,795 _RS28830 Position (kb) 2017 2018 2019Strain fitness (log2 ratio) -1 0 1 2 3 4at 2016.807 kb on + strand, within BPHYT_RS28820at 2016.837 kb on + strandat 2016.839 kb on + strandat 2016.894 kb on + strandat 2016.894 kb on + strandat 2016.895 kb on - strandat 2017.056 kb on + strandat 2017.056 kb on + strandat 2017.137 kb on + strandat 2017.543 kb on - strand, within BPHYT_RS28825at 2017.562 kb on - strand, within BPHYT_RS28825at 2017.725 kb on + strand, within BPHYT_RS28825at 2017.851 kb on + strand, within BPHYT_RS28825at 2018.580 kb on + strandat 2018.628 kb on + strandat 2018.981 kb on + strand, within BPHYT_RS28830

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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2,016,807 + BPHYT_RS28820 0.88 +4.7
2,016,837 + +0.0
2,016,839 + +0.8
2,016,894 + -1.2
2,016,894 + +1.1
2,016,895 - -0.8
2,017,056 + -0.6
2,017,056 + +0.6
2,017,137 + +0.3
2,017,543 - BPHYT_RS28825 0.32 +1.7
2,017,562 - BPHYT_RS28825 0.33 +0.8
2,017,725 + BPHYT_RS28825 0.44 -0.3
2,017,851 + BPHYT_RS28825 0.52 +1.1
2,018,580 + -0.2
2,018,628 + -1.3
2,018,981 + BPHYT_RS28830 0.15 -1.3

Or see this region's nucleotide sequence