Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27495

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27490 and BPHYT_RS27495 are separated by 405 nucleotidesBPHYT_RS27495 and BPHYT_RS27500 are separated by 704 nucleotides BPHYT_RS27490: BPHYT_RS27490 - porin, at 1,743,573 to 1,744,748 _RS27490 BPHYT_RS27495: BPHYT_RS27495 - hypothetical protein, at 1,745,154 to 1,745,534 _RS27495 BPHYT_RS27500: BPHYT_RS27500 - hypothetical protein, at 1,746,239 to 1,746,736 _RS27500 Position (kb) 1745 1746Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1744.374 kb on + strand, within BPHYT_RS27490at 1744.492 kb on - strand, within BPHYT_RS27490at 1744.497 kb on + strand, within BPHYT_RS27490at 1745.087 kb on - strandat 1745.106 kb on + strandat 1745.140 kb on - strandat 1745.140 kb on - strandat 1745.140 kb on - strandat 1745.247 kb on + strand, within BPHYT_RS27495at 1745.556 kb on - strandat 1745.590 kb on - strandat 1745.717 kb on + strandat 1745.867 kb on - strandat 1746.071 kb on + strandat 1746.257 kb on + strandat 1746.480 kb on + strand, within BPHYT_RS27500at 1746.481 kb on - strand, within BPHYT_RS27500

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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1,744,374 + BPHYT_RS27490 0.68 +0.2
1,744,492 - BPHYT_RS27490 0.78 -3.7
1,744,497 + BPHYT_RS27490 0.79 -0.8
1,745,087 - -0.3
1,745,106 + +0.8
1,745,140 - -0.1
1,745,140 - -0.7
1,745,140 - +0.4
1,745,247 + BPHYT_RS27495 0.24 -1.2
1,745,556 - +0.9
1,745,590 - -1.6
1,745,717 + -0.1
1,745,867 - -0.3
1,746,071 + -0.3
1,746,257 + +1.8
1,746,480 + BPHYT_RS27500 0.48 +0.0
1,746,481 - BPHYT_RS27500 0.49 +0.2

Or see this region's nucleotide sequence