Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18130

Experiment: L-Serine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS18125 and BPHYT_RS18130 are separated by 47 nucleotidesBPHYT_RS18130 and BPHYT_RS18135 are separated by 134 nucleotidesBPHYT_RS18135 and BPHYT_RS18140 are separated by 178 nucleotides BPHYT_RS18125: BPHYT_RS18125 - elongation factor Tu, at 4,075,478 to 4,076,668 _RS18125 BPHYT_RS18130: BPHYT_RS18130 - elongation factor G, at 4,076,716 to 4,078,818 _RS18130 BPHYT_RS18135: BPHYT_RS18135 - 30S ribosomal protein S7, at 4,078,953 to 4,079,423 _RS18135 BPHYT_RS18140: BPHYT_RS18140 - 30S ribosomal protein S12, at 4,079,602 to 4,079,982 _RS18140 Position (kb) 4076 4077 4078 4079Strain fitness (log2 ratio) -1 0 1at 4076.662 kb on + strandat 4076.662 kb on + strandat 4076.718 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
remove
4,076,662 + -1.1
4,076,662 + -0.7
4,076,718 - -1.1

Or see this region's nucleotide sequence