Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12735

Experiment: L-Serine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS12730 and BPHYT_RS12735 are separated by 618 nucleotidesBPHYT_RS12735 and BPHYT_RS12740 are separated by 149 nucleotides BPHYT_RS12730: BPHYT_RS12730 - single-stranded DNA exonuclease, at 2,902,427 to 2,904,133 _RS12730 BPHYT_RS12735: BPHYT_RS12735 - peptide chain release factor 2, at 2,904,752 to 2,905,498 _RS12735 BPHYT_RS12740: BPHYT_RS12740 - lysine--tRNA ligase, at 2,905,648 to 2,907,204 _RS12740 Position (kb) 2904 2905 2906Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2903.852 kb on + strand, within BPHYT_RS12730at 2903.852 kb on + strand, within BPHYT_RS12730at 2903.852 kb on + strand, within BPHYT_RS12730at 2903.853 kb on - strand, within BPHYT_RS12730at 2903.853 kb on - strand, within BPHYT_RS12730at 2904.079 kb on + strandat 2904.132 kb on - strandat 2904.372 kb on + strandat 2904.382 kb on + strandat 2904.382 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
remove
2,903,852 + BPHYT_RS12730 0.83 +0.1
2,903,852 + BPHYT_RS12730 0.83 -0.7
2,903,852 + BPHYT_RS12730 0.83 -0.4
2,903,853 - BPHYT_RS12730 0.84 +2.3
2,903,853 - BPHYT_RS12730 0.84 -1.0
2,904,079 + -0.2
2,904,132 - +0.5
2,904,372 + +0.1
2,904,382 + -3.1
2,904,382 + +0.4

Or see this region's nucleotide sequence