Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11970

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS11965 and BPHYT_RS11970 are separated by 69 nucleotidesBPHYT_RS11970 and BPHYT_RS11975 are separated by 179 nucleotides BPHYT_RS11965: BPHYT_RS11965 - alkylhydroperoxidase, at 2,723,595 to 2,724,074 _RS11965 BPHYT_RS11970: BPHYT_RS11970 - cupin, at 2,724,144 to 2,724,551 _RS11970 BPHYT_RS11975: BPHYT_RS11975 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 2,724,731 to 2,725,939 _RS11975 Position (kb) 2724 2725Strain fitness (log2 ratio) -1 0 1 2at 2723.163 kb on - strandat 2723.163 kb on - strandat 2723.318 kb on + strandat 2723.318 kb on + strandat 2723.321 kb on + strandat 2723.322 kb on - strandat 2723.355 kb on + strandat 2723.916 kb on + strand, within BPHYT_RS11965at 2724.482 kb on + strand, within BPHYT_RS11970at 2724.719 kb on + strandat 2725.292 kb on - strand, within BPHYT_RS11975

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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2,723,163 - -0.8
2,723,163 - +0.1
2,723,318 + +0.2
2,723,318 + -1.0
2,723,321 + +0.1
2,723,322 - -0.6
2,723,355 + +0.1
2,723,916 + BPHYT_RS11965 0.67 +0.0
2,724,482 + BPHYT_RS11970 0.83 -1.4
2,724,719 + +1.5
2,725,292 - BPHYT_RS11975 0.46 +2.2

Or see this region's nucleotide sequence