Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10865

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS10855 and BPHYT_RS10860 overlap by 1 nucleotidesBPHYT_RS10860 and BPHYT_RS10865 are separated by 322 nucleotidesBPHYT_RS10865 and BPHYT_RS10870 overlap by 11 nucleotides BPHYT_RS10855: BPHYT_RS10855 - histidine kinase, at 2,469,047 to 2,470,411 _RS10855 BPHYT_RS10860: BPHYT_RS10860 - transcriptional regulator, at 2,470,411 to 2,471,070 _RS10860 BPHYT_RS10865: BPHYT_RS10865 - transporter, at 2,471,393 to 2,472,766 _RS10865 BPHYT_RS10870: BPHYT_RS10870 - RND transporter, at 2,472,756 to 2,473,877 _RS10870 Position (kb) 2471 2472 2473Strain fitness (log2 ratio) -3 -2 -1 0 1at 2470.507 kb on - strand, within BPHYT_RS10860at 2470.938 kb on - strand, within BPHYT_RS10860at 2471.060 kb on - strandat 2471.120 kb on - strandat 2471.207 kb on + strandat 2471.317 kb on + strandat 2471.318 kb on - strandat 2471.319 kb on + strandat 2471.521 kb on + strandat 2471.522 kb on - strandat 2471.750 kb on + strand, within BPHYT_RS10865at 2472.030 kb on - strand, within BPHYT_RS10865at 2472.050 kb on + strand, within BPHYT_RS10865at 2472.260 kb on + strand, within BPHYT_RS10865at 2472.336 kb on - strand, within BPHYT_RS10865at 2472.337 kb on + strand, within BPHYT_RS10865at 2472.438 kb on - strand, within BPHYT_RS10865

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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2,470,507 - BPHYT_RS10860 0.15 -0.5
2,470,938 - BPHYT_RS10860 0.80 -0.2
2,471,060 - +0.7
2,471,120 - +0.7
2,471,207 + +0.4
2,471,317 + +0.1
2,471,318 - -3.2
2,471,319 + +0.2
2,471,521 + -1.4
2,471,522 - +0.7
2,471,750 + BPHYT_RS10865 0.26 -0.9
2,472,030 - BPHYT_RS10865 0.46 +0.3
2,472,050 + BPHYT_RS10865 0.48 +0.2
2,472,260 + BPHYT_RS10865 0.63 -1.6
2,472,336 - BPHYT_RS10865 0.69 -2.1
2,472,337 + BPHYT_RS10865 0.69 -0.6
2,472,438 - BPHYT_RS10865 0.76 +0.3

Or see this region's nucleotide sequence