Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS08540 and BPHYT_RS08545 are separated by 153 nucleotides BPHYT_RS08545 and BPHYT_RS08550 are separated by 128 nucleotides BPHYT_RS08550 and BPHYT_RS08555 are separated by 18 nucleotides
BPHYT_RS08540: BPHYT_RS08540 - GntR family transcriptional regulator, at 1,953,472 to 1,954,197
_RS08540
BPHYT_RS08545: BPHYT_RS08545 - oxidoreductase, at 1,954,351 to 1,955,343
_RS08545
BPHYT_RS08550: BPHYT_RS08550 - signal peptidase, at 1,955,472 to 1,956,170
_RS08550
BPHYT_RS08555: BPHYT_RS08555 - ABC transporter permease, at 1,956,189 to 1,956,848
_RS08555
Position (kb) 1954
1955
1956 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1953.380 kb on + strand at 1954.906 kb on + strand, within BPHYT_RS08545 at 1954.907 kb on - strand, within BPHYT_RS08545 at 1955.342 kb on - strand at 1955.800 kb on - strand, within BPHYT_RS08550 at 1956.102 kb on + strand at 1956.286 kb on + strand, within BPHYT_RS08555 at 1956.287 kb on - strand, within BPHYT_RS08555 at 1956.305 kb on - strand, within BPHYT_RS08555
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 1,953,380 + +1.8 1,954,906 + BPHYT_RS08545 0.56 -0.5 1,954,907 - BPHYT_RS08545 0.56 -3.3 1,955,342 - -2.6 1,955,800 - BPHYT_RS08550 0.47 -1.0 1,956,102 + -0.6 1,956,286 + BPHYT_RS08555 0.15 -0.0 1,956,287 - BPHYT_RS08555 0.15 +0.1 1,956,305 - BPHYT_RS08555 0.18 +0.8
Or see this region's nucleotide sequence