Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07845

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07840 and BPHYT_RS07845 are separated by 105 nucleotidesBPHYT_RS07845 and BPHYT_RS07850 are separated by 174 nucleotides BPHYT_RS07840: BPHYT_RS07840 - muconate cycloisomerase, at 1,786,249 to 1,787,376 _RS07840 BPHYT_RS07845: BPHYT_RS07845 - LysR family transcriptional regulator, at 1,787,482 to 1,788,405 _RS07845 BPHYT_RS07850: BPHYT_RS07850 - catechol 1,2-dioxygenase, at 1,788,580 to 1,789,515 _RS07850 Position (kb) 1787 1788 1789Strain fitness (log2 ratio) -2 -1 0 1at 1786.488 kb on - strand, within BPHYT_RS07840at 1786.888 kb on - strand, within BPHYT_RS07840at 1786.928 kb on - strand, within BPHYT_RS07840at 1786.928 kb on - strand, within BPHYT_RS07840at 1787.159 kb on + strand, within BPHYT_RS07840at 1787.745 kb on - strand, within BPHYT_RS07845at 1788.265 kb on + strand, within BPHYT_RS07845at 1788.266 kb on - strand, within BPHYT_RS07845at 1788.471 kb on - strandat 1788.760 kb on + strand, within BPHYT_RS07850at 1788.761 kb on - strand, within BPHYT_RS07850at 1789.070 kb on - strand, within BPHYT_RS07850at 1789.148 kb on - strand, within BPHYT_RS07850at 1789.178 kb on - strand, within BPHYT_RS07850

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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1,786,488 - BPHYT_RS07840 0.21 +0.8
1,786,888 - BPHYT_RS07840 0.57 +0.8
1,786,928 - BPHYT_RS07840 0.60 -0.3
1,786,928 - BPHYT_RS07840 0.60 +0.4
1,787,159 + BPHYT_RS07840 0.81 -0.8
1,787,745 - BPHYT_RS07845 0.28 +0.2
1,788,265 + BPHYT_RS07845 0.85 -0.5
1,788,266 - BPHYT_RS07845 0.85 -0.2
1,788,471 - -0.3
1,788,760 + BPHYT_RS07850 0.19 -2.0
1,788,761 - BPHYT_RS07850 0.19 +0.3
1,789,070 - BPHYT_RS07850 0.52 -1.4
1,789,148 - BPHYT_RS07850 0.61 -1.1
1,789,178 - BPHYT_RS07850 0.64 -2.0

Or see this region's nucleotide sequence