Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00325

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS00325 and BPHYT_RS00330 are separated by 971 nucleotides BPHYT_RS00325: BPHYT_RS00325 - hypothetical protein, at 82,302 to 82,532 _RS00325 BPHYT_RS00330: BPHYT_RS00330 - 4-vinyl reductase 4VR, at 83,504 to 84,052 _RS00330 Position (kb) 82 83Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 81.387 kb on - strandat 81.444 kb on + strandat 81.448 kb on + strandat 81.568 kb on + strandat 81.569 kb on - strandat 81.653 kb on + strandat 81.682 kb on - strandat 81.833 kb on + strandat 81.912 kb on - strandat 81.912 kb on - strandat 81.980 kb on + strandat 81.981 kb on - strandat 82.023 kb on + strandat 82.023 kb on + strandat 82.112 kb on + strandat 82.112 kb on + strandat 82.388 kb on - strand, within BPHYT_RS00325at 82.503 kb on + strand, within BPHYT_RS00325at 82.547 kb on + strandat 82.548 kb on - strandat 82.795 kb on + strandat 82.796 kb on - strandat 82.854 kb on + strandat 82.855 kb on - strandat 82.932 kb on + strandat 83.283 kb on + strandat 83.283 kb on + strandat 83.283 kb on + strandat 83.283 kb on + strandat 83.386 kb on + strandat 83.386 kb on + strandat 83.427 kb on + strandat 83.427 kb on + strandat 83.428 kb on - strandat 83.428 kb on - strandat 83.428 kb on - strandat 83.428 kb on - strandat 83.431 kb on + strandat 83.432 kb on - strandat 83.532 kb on + strandat 83.532 kb on + strandat 83.532 kb on + strandat 83.532 kb on + strandat 83.532 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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81,387 - +4.6
81,444 + -1.1
81,448 + +0.5
81,568 + +2.5
81,569 - +0.2
81,653 + -0.0
81,682 - -1.0
81,833 + +0.8
81,912 - -0.3
81,912 - +1.1
81,980 + +0.5
81,981 - +0.0
82,023 + +1.6
82,023 + +0.4
82,112 + +1.4
82,112 + -0.6
82,388 - BPHYT_RS00325 0.37 -1.2
82,503 + BPHYT_RS00325 0.87 -1.0
82,547 + -0.2
82,548 - -1.0
82,795 + +0.5
82,796 - -0.1
82,854 + +1.0
82,855 - -0.1
82,932 + -0.8
83,283 + -0.2
83,283 + -0.8
83,283 + -1.7
83,283 + +0.2
83,386 + +0.7
83,386 + -0.5
83,427 + +0.1
83,427 + -0.8
83,428 - -0.2
83,428 - -0.3
83,428 - +0.4
83,428 - -0.5
83,431 + -1.7
83,432 - +1.4
83,532 + +0.2
83,532 + -0.1
83,532 + +0.1
83,532 + +1.2
83,532 + -2.9

Or see this region's nucleotide sequence